Brassica rapa (field mustard): 103844121
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Entry
103844121 CDS
T03449
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103844121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103844121
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
103844121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
DEAD
Rrf2
Motif
Other DBs
NCBI-GeneID:
103844121
NCBI-ProteinID:
XP_009119150
LinkDB
All DBs
Position
A10:complement(2276397..2282552)
Genome browser
AA seq
1591 aa
AA seq
DB search
MDWIGSRIKFRNKERLEEVKKMKPAEEEAHVSSRRKRKRKRRHRDHDSDLEDITETYHNN
NLPADVTQSKSSGSVRRRRRRKDHDSDIEDITEAYHKDHDSDLVDVTETCNTDHDSDLVD
VTVTYNNNLPAEVTDNNFSDGDGVKRTESEHNMEEEEEGLFSVRVEEVDTSVPGPSGLSI
KEKLLSDEVLDLDMVKSAPSLPDEVLGLDVVKSVPVLSDEIPDLDVIKSVPSCSSESSIQ
QKLCDEIMDVIRSAESSSESSIKEKLSEEIMDVDVVKPVPKLSDGIMDVDVVKSVPSSSG
SSNKGNESLDSDVVKSVTSSSGSEENTCVKDKCSSEVRGVEAAKPVPAEIEIISDSESET
KHSTKKKLSFAECSRVLDSTSESSEEEGASETNNNAKEDVTVESLSSSSSSSSSSSSSAS
ALSLSSSSSSSSEDEVSSKEVVGESDDDDCRKASSPIRKVSEVRRKPLGRYKRAGPSSIT
PRKQFQKIRKLNHPEEEEEDRLQAKPKEFKMIQKLNRPEEEEEDRFQAKPVKEFKRLQKV
NRQEEEEERFQAKPVQEFKRLQKLNRQEEEDDRFQTKPRNEDKTIQKFNLQEEEEDRFQD
KPRNEDRRIQKFHCPEEEQQHIGVERVTKEHSNVVFTCVHCDKENTGIFDSDSFCFRPHA
ITRGEEDADDLNKHDYVPINTEKSPEKPSTSRPETENPKEVITPARPSTSRPETVKAKEI
QAPEMPPRQFSLKTSMPVTPAEGLATPSLVNETVDNESASSIISGDESGYESEPSLKEKE
AAKSNNNNSGWRMLDGSRKEVDLFRLLVNSVRENDRLGEEEEDDILVSSPEEEQPEEQDE
RKYDDDGLLIIRPPPLVEMFGMVEPAPPVVSEAQIEEDTMWEEVAFYTNANEVDLQLHSE
IEKEISADDSPGAACRQGNHELCLDLEIGLKCIHCCFVLREIRGLDVSEWGERNTSGRRK
NDRSEEEENSNFIGNLDFEANSNNNLKEGSESTQGTVWDKIPGVKSQMYPHQQEGFEFIW
RNLAGTIMLNELQDFENSEETGGCIMSHAPGTGKTRLTIIFLQSYLECFPNCKPVIIAPA
SLLLTWAEEFKKWNISIPFHNLSSLEFTGRENSAASKLLMQKNSSARSNNEIRMVKIYSW
IKSKSILGISYNLYEKLAGVKDEDRKTKGKPDKELEDIREILMDVPGLLVLDEAHTPRNQ
RSCIWKTLSKVETQKRILLSGTPFQNNFLELGNVLGLARPKYLERLMSTLKKSGMTVTKR
GKKALGDKINNRGIEELKAVMLPFVHVHKGSILQKSLPGLRECVVVLNPPNLQRKVLESI
EVTHNQKTKNVFETEHKLSLVSVHPSLVSHCKLTGKESLTINEALLAQLKKVRLDPNQSV
KTRFLMEFIKLCVVIKEKVLVFSQYIDPLKLIMKHLVNWFKWTEGEEVLYMHGKLEQKQR
QTLINEFNDPKSKAKVLLASTKACSEGINLVGASRVILLDVVWNPAVERQAISRAYRIGQ
KRIVYTYHLVAKGTPEGTKYCKQAQKDRISELVFACSSRPDKGKEKIAEAVTEDKVLDTM
VKHLKLGDMFDNLIVQPKEADLVEGFSILMP
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggattggattggttcaagaatcaagtttaggaacaaagagcgtcttgaagaagtgaag
aagatgaaaccggcagaggaagaggctcacgtgtcttctcgccggaaaagaaagcggaag
agaagacatagggaccatgattctgaccttgaagacatcaccgagacttaccacaacaac
aatctccctgcagatgtaactcaaagcaagtcctctggtagtgtaagaagaagaagaagg
agaaaggaccatgactctgacattgaagacatcaccgaggcttaccacaaggaccatgac
tccgaccttgtagatgtcaccgagacttgcaacacggaccatgactcagaccttgtagat
gtcacagtgacttacaacaacaatctccctgctgaggtaactgataacaacttctctgat
ggtgatggtgtaaaaagaaccgagtctgaacacaacatggaggaggaggaggagggtttg
tttagtgttagggttgaggaagtagacacatcagttccgggcccctcagggttgagtatt
aaggagaagttgttgtctgatgaggttttggatttggatatggtcaaatcagctccaagc
ttgcctgatgaggttttaggcttagatgtggttaagtcagttccagtgctgtctgatgag
attccggatttagatgtgatcaagtcagttcctagctgctcctctgagtcaagcattcag
cagaagttgtgtgatgagatcatggatgtgattagatcagctgagagctcctcagagtca
agtattaaggagaagttgtctgaggagattatggatgtggatgtggtcaaaccagttcca
aagttgtctgatgggattatggatgtggatgtggtcaagtctgttcctagctcctctggg
tcaagtaacaaggggaatgagagtttggattctgatgtggtcaaatctgttacgagctcc
tcagggtcagaagagaacacatgtgtgaaggacaagtgttcctctgaggttagaggagtg
gaagctgcaaaaccagttcctgctgagatagagatcatttcagattctgagtctgaaacc
aaacattcaaccaagaagaagctttcttttgcggagtgcagcagagtcttagactccacc
agtgaaagcagcgaggaagaaggagctagtgaaaccaataataacgctaaagaggatgta
actgtggagtctttgtcttcttcttcatcatcatcttcttcttcttcatcttcagcttca
gctttatctttatcttcctcttcctcctcctcaagtgaagatgaagtcagttcaaaggag
gtggttggagaatcagatgatgatgattgtagaaaggccagttcaccaatcaggaaagta
tctgaagtgagaaggaagcctttgggaaggtataaaagagctggtcctagctcaatcacg
cctaggaaacagtttcagaagattcggaagctaaaccatccagaagaagaagaagaagat
agacttcaagccaagcctaaagagttcaaaatgattcagaagcttaaccgcccagaagaa
gaagaagaagacagatttcaagccaagcctgtaaaagagttcaaaaggcttcagaaggtt
aaccgtcaagaagaggaagaagaaagattccaagccaagcctgtacaagagttcaaaagg
cttcagaagcttaaccgtcaagaagaagaagatgatagatttcaaaccaagcctaggaat
gaggacaagactattcagaagtttaacctccaagaagaagaagaagataggtttcaagac
aagcctagaaatgaggacaggaggattcagaagttccactgtccagaagaagaacaacaa
catataggagttgaaagagtaacaaaggagcatagcaatgtggtgttcacttgtgttcac
tgtgacaaagagaatacaggaatctttgattcagacagcttttgcttcagaccacatgct
attacaagaggtgaagaagatgctgatgatctgaacaaacatgattatgttcctatcaac
actgagaaatcccctgagaagccctccacatccagacctgaaactgagaatccaaaagaa
gtgataacacctgcaagaccgtccacatcaagacctgaaactgtgaaagcaaaagagatc
caagctcctgaaatgccgcctagacagttttcactgaagacaagtatgcctgtcacacct
gcagaagggttagccacgccttctttggtgaatgagacagtggataatgagtctgcttct
tccatcatctctggagatgaatccggatatgaatctgagccttcacttaaagagaaagag
gcagccaagtctaacaacaacaactccgggtggagaatgctggatgggagccgcaaagaa
gttgatctcttcaggcttcttgtcaactccgttagggagaatgatcggttaggggaagaa
gaggaagatgacatacttgtctcttcacctgaggaagagcaacctgaagaacaagatgaa
agaaaatacgatgatgacggcttgctaatcatcaggccaccaccactggtggagatgttt
ggcatggtggagcctgcaccaccggtggtttccgaggcgcagatagaagaagatacgatg
tgggaagaggtggcgttttatactaatgcaaacgaagtagatctccagcttcattcagag
attgagaaagagatatcagctgatgatagtccaggagcagcttgtagacaagggaatcat
gaactttgtctagatcttgagatcggtttaaagtgcatacactgctgctttgtgttgaga
gagatcagaggactagatgtatctgaatggggagagaggaacacaagtggaaggagaaag
aatgacagatcagaagaggaagaaaacagcaacttcattgggaaccttgattttgaagct
aacagcaataacaacttgaaggaaggatctgaatctactcaagggactgtttgggataag
atcccaggcgtcaaatctcagatgtacccacaccagcaagagggttttgagttcatctgg
aggaacttggccggtaccattatgctaaacgagcttcaggactttgagaacagtgaggaa
acaggaggatgcatcatgtcacacgctccagggacagggaagactcgtctcaccatcatc
ttccttcagtcttacttggaatgcttccctaattgcaaacctgtgatcatcgctcctgca
agcctgcttctcacatgggctgaggagttcaagaaatggaacataagcattccttttcac
aacctcagcagcttggagttcactgggagagagaactcagctgcttccaagctcctgatg
cagaagaactcaagcgctagaagcaataacgagataaggatggtgaagatctactcttgg
ataaaatcaaagagcatactagggatcagttacaacctctacgagaagcttgcaggagtt
aaggacgaggacagaaagacaaaagggaaaccagacaaagagctggaagatatcagagag
atactaatggatgtgcctggactgctcgttcttgacgaggcacatacccctaggaaccag
agaagctgtatatggaagacactgtctaaagtggagacacagaaacgcatcttgctctct
gggacgcctttccagaacaacttcttagagcttggcaatgttttgggccttgcgaggcct
aagtacttagagaggctcatgtccacgctcaagaagagtgggatgacagtcaccaagaga
gggaaaaaagctttgggggataaaatcaacaaccgtgggatagaggagcttaaggctgtg
atgcttccctttgtgcatgttcacaaaggaagcattcttcagaagagcctccccggtttg
agagagtgtgttgtggtgttaaaccctcctaatctccagaggaaagtcctggagtctatt
gaagtcactcacaaccagaagaccaagaatgtgtttgagacggaacacaagctatctctt
gtctcggtccatccttctcttgtctctcactgcaaattgacagggaaagagagtttgact
atcaatgaagccttgcttgcgcagctgaagaaggtgaggcttgatccaaaccaaagcgtg
aagacaaggtttctcatggagttcatcaagctgtgcgttgtgattaaggagaaggtgctt
gtgtttagtcagtacattgacccgctgaagctgataatgaagcatttggtgaactggttt
aaatggactgaaggggaagaagtgttgtacatgcacgggaagctcgagcagaagcagaga
caaaccttgatcaacgagttcaacgaccccaagtccaaggctaaagtgttgctagcttcg
actaaagcgtgctctgaagggatcaatcttgtgggagcatcgagggtgattctcttggat
gttgtgtggaaccctgcggtggagagacaagctataagccgtgcttataggatcgggcag
aagaggattgtttacacgtatcacttggttgctaaaggaactccagaggggactaagtat
tgtaagcaggcgcagaaggataggatctcggagctggtgtttgcgtgttcttcaaggcct
gataaggggaaagagaagattgctgaagctgtgactgaggataaagtgttggacactatg
gtgaagcatctgaagcttggggatatgtttgataatctcattgtccaaccaaaggaagct
gacttagttgaaggttttagcatactcatgccatga
DBGET
integrated database retrieval system
