Brassica rapa (field mustard): 103844197
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Entry
103844197 CDS
T03449
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103844197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103844197
03036 Chromosome and associated proteins [BR:
brp03036
]
103844197
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103844197
Coactivators
SAGA/TFTC/STAGA complex
103844197
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103844197
STAGA complex
103844197
TFTC complex
103844197
SAGA complex
103844197
SLIK complex
103844197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
Motif
Other DBs
NCBI-GeneID:
103844197
NCBI-ProteinID:
XP_009119229
UniProt:
M4DFU5
LinkDB
All DBs
Position
A10:complement(1812135..1816521)
Genome browser
AA seq
540 aa
AA seq
DB search
MSIVPKETIEVIAQSIGITNLSPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASD
VDGALNLRNLEPIYGFGSGGPIRFRKAIGHRDLFYTDDREVDFKDVIEAPLPKAPLDTEI
VCHWLAIEGVQPAIPENAPLEVIRAPAENQIYQQKDGPLIDIRLPVKHVLSKELQLYFQK
IAELTLSKSNPSLFKEALVSLASDSGLHPLVPYFTNFIADEVSRGLNDFLLLFNLMHVVR
SLLQNPHIHIEPYLHQLMPSVVTCLVSRKLGNRFADNHWDLRDFTANLVALICKRFGNTY
ITLQSRLTKTLVNALLDPKKALTQHYGAIQGLAALGHNVVRLLVLSNLEPYLSLLEPELD
AEKQKNQMKSYEAWRVYGAILRAAGLCIHDRLKIFPTLPSPSPSFPSKGKGKVISTEPNK
RKLGVDSSENRSPHKRLIATDGSDGGPSPMQVDRPTGDANPPQNSVRPSSSEQASDGNAP
ESRNAKEKDDSKGRAITRKAILDQIWKDDLDSGRLLVKLHQLYGDRILPFIPSTEMSLFL
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtacctaaggaaacgattgaggttatagcacagagtattgggattaccaat
ttgtcacctgaggctgcactgatgcttgctcctgatgttgagtatcgtgttcgagagatc
atgcaggaagctatcaaatgcatgcgtcactctaagagaacgactttaacagcttccgat
gttgatggtgctctcaacttaaggaaccttgagccgatatatgggtttggctcaggagga
ccgattcgttttagaaaagctattgggcatcgggatttgttctacactgatgacagagag
gtggatttcaaagatgtgattgaagctccactaccaaaagctcctcttgatactgaaatt
gtctgtcactggcttgcgattgaaggagtgcagccagctataccagaaaacgctccttta
gaagtcattagagcacctgccgaaaatcaaatttatcaacaaaaggacggacctcttatt
gacattaggctacctgtgaagcatgtattatctaaggagcttcagttgtacttccaaaag
attgctgaacttacattgagcaagtcaaatccctctctgtttaaagaggcattagtgagc
ttggcctcagactcaggacttcatcccctagttccatacttcacaaatttcattgctgat
gaggtatcacgtgggttaaatgacttcctgctcctgtttaatttaatgcacgttgtcaga
agtcttctgcagaatcctcatatacacatagaaccttatcttcaccagctgatgccctct
gttgtaacatgccttgtatcgagaaagcttggaaatagatttgccgacaaccattgggat
ctgagagattttactgcgaatctggttgcactgatatgtaaaaggtttggaaacacatac
attactcttcagtctcgtcttacgaaaactttagttaatgcacttttggacccaaagaag
gccttgactcagcactacggtgcaattcaaggattagcggctttagggcacaatgtcgta
cgccttcttgttctgtcaaatcttgaaccgtatctgagtcttctcgaaccagaattggat
gctgagaagcaaaagaaccagatgaagagctacgaagcttggcgtgtatatggagctata
ctgcgtgctgcaggtctgtgtatacatgaccggcttaaaatcttcccaactctaccatct
ccatcaccaagttttcccagtaagggaaaggggaaagtaatcagtactgagccaaataag
cgaaagctgggtgtagattcttcagaaaaccggtcacctcataaaagattgatagctaca
gatgggtcagatggtggtccatccccaatgcaagtagatagaccgacgggagatgccaat
ccgccacaaaactccgttcgaccatcctcgtcagaacaagcgtctgatggtaacgcacct
gaaagcagaaacgcaaaggagaaagatgacagcaagggccgggctattaccaggaaagct
atccttgatcagatttggaaagatgacctcgattccggacggctcttggtgaaactgcac
caactctatggtgataggatccttcctttcatcccttctacagagatgtcattattcctc
taa
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