Brassica rapa (field mustard): 103844229
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Entry
103844229 CDS
T03449
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103844229
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103844229
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103844229
NCBI-ProteinID:
XP_009119265
UniProt:
M4DFR8
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Position
A10:complement(1652517..1656564)
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AA seq
431 aa
AA seq
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MAVLPTWILAMMCLLFFVGAMENSTHDKISSLSSSDENEWNTHAVTNPDEVADEVIALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDANWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPNDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRTEGDLLQNGAYFTASGAASSGSYARASSLAAKSSSLVATITNDAGA
LPCRRGRQCTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcttccgacatggattttagctatgatgtgtctactcttcttcgtcggagca
atggagaacagtacgcacgacaagatctcatctctctccagttccgacgaaaatgaatgg
aacacgcatgcagtgacaaatccagatgaagtagcggacgaagttatcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctaggttactttacttgcggaacaggc
aaccctatcgacgattgttggagatgcgatgccaactggcacaagaaccgcaaacgccta
gcggactgtggaatcgggttcggaagaaacgcgatcggtggacgagacgggcgtttctac
gtagtcaccgacccaaatgacgacaacccggttaaccctagaccggggacactacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgcgacatggtgattcagcta
aaacaagagctgatcgtcaacagcttcaaaacgatcgacggacgcggcgcaaacgttcac
atcgctaacggcggttgcatcacgattcagtacgtgacgaacgtcatcgtgcatgggttg
catattcatgactgtagaccgacgggtaacgctatggtgagaagctcagagacgcacttt
gggtggaggactatggcggatggtgacgcgatttcgatctttggatcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgctgttatgggctcg
acggcgattaccatctctaacaaccatatgactcatcataacgaggttatgttgctcgga
catagtgattcttacacgagggataaagctatgcaagttactattgcttataaccatttt
ggagtcggacttattcaaagaatgccgaggtgccgacacgggtatttccatgtcgtgaac
aatgactacactcactgggaaatgtacgcgattggtggaagcgcaaacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaagaatccctttgctaaagaggtgactaagaga
gtggacacaccggctagtcattggaaaggatggaactggagaacggaaggagatttgctt
cagaacggagcttatttcactgcttctggagccgcttcatctggtagctacgcacgtgcc
tctagcctcgcagctaaatcttcttcattggtcgcaaccattactaacgacgctggagct
ctaccttgtcgcagaggacgtcaatgtacctcatag
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