Brassica rapa (field mustard): 103844248
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Entry
103844248 CDS
T03449
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
brp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103844248
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103844248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103844248
04121 Ubiquitin system [BR:
brp04121
]
103844248
03400 DNA repair and recombination proteins [BR:
brp03400
]
103844248
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103844248
Spliceosome [BR:
brp03041
]
Complex B
Other components
Prp19 complex
103844248
Complex C
Prp19-CDC5 complex
103844248
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
U-box type E3
103844248
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
103844248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_DCAF12
WD40_like
zf-Nse
eIF2A
Beta-prop_DCAF4
NBCH_WD40
PAS_11
PUMA_CC
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
103844248
NCBI-ProteinID:
XP_009119290
UniProt:
M4DFP9
LinkDB
All DBs
Position
A10:1575237..1579757
Genome browser
AA seq
522 aa
AA seq
DB search
MNCAISGEVPVEPVVSKKSGLLYEKRLIETHISDFGKCPVTGEPHTIDDIVAVKTGKIVK
PKPLHTASIPGLLGTFQTEWDGLMLSNFSLEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARQLLAEGERQLPAAPEVASENVTLSNGKRAADGGEQGPDAKKMRLGISGEVITEL
TDCNAALSQQRKKRQIPPTLASVDALEKFTQLSSHPLHKTSKPGIFSMDILHSKDVIATG
GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGSSEDGSYA
CRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDMSSGLCLAQVTDDSEKVDYTAAA
FHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLATSALDGVRL
WDLRKLKNFRTFEFPNANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPVKTLPDLSGT
GRATCVKFGPDAKYVAVGSMDRNLRIFGLPSNDSTEDSAQDS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgcaatttccggcgaagttccggtggagcccgttgtttcgaagaagtctggt
ttgctctacgagaagcgcctaatcgagacgcacatatctgattttgggaaatgccctgtt
actggtgaaccgcataccattgatgacattgttgccgtcaaaaccggaaagatcgtaaag
ccaaaaccattacacacagctagcatccctggattgcttggaacgttccagactgaatgg
gatggtttgatgctatcaaatttttcacttgaacaacaactgcatactgcgaggcaagag
ctgagtcatgctttgtatcagcatgatgctgcttgccgtgtgattgctaggcttaaaaaa
gaaagagacgaggcacgacaattgcttgcagagggtgaaaggcagttacctgcagccccc
gaagttgcctcagagaacgttactcttagtaatggtaaacgagctgccgatggtggtgaa
caaggtcccgatgcaaagaaaatgcgtcttggaatttcgggtgaagttattacagaactg
acagattgtaatgctgctctttcccagcagcgtaaaaagagacagatccctccaacgttg
gcttcagttgatgctttggagaagttcactcaactctcaagccacccacttcacaagacc
agcaaacctggtattttttcaatggacatcctacattctaaggatgtcattgcaactgga
ggaatagatacaactgctgttctctttgaccgtccctcaggacaaatcttgtcaacgctg
actggtcattcgaagaaggttacgagtattaagtttgtaggtgacactgatcttgttttg
actgcttcatcagacaagacagtccgtatctgggggagttccgaggatgggagctatgcc
tgtaggcatacattgaaagatcactctgcagaggtgcgagctgtcactgtccatgcaacg
aataaatactttgtgtcggcatcgcttgacagtacctggtgcttctatgatatgtcctcc
ggtttatgccttgctcaggtgacagatgattctgaaaaggtggattacacggctgccgct
ttccatcctgatggtctcattcttggaactggtactgctcagtctattgtcaagatctgg
gatgtcaagagtcaggcaaacgtggcgaagttcggtggacacactggagaaatcacatcc
gtatcattttctgaaaatggttatttcctcgcgacatctgcgctggatggtgttagattg
tgggacctgcgcaagctaaaaaacttccgaacatttgaatttccaaatgcaaactcagtg
gagtttgaccatagcggatcttatcttggcattgctgcttcagatataagagtattccag
acggccagtgttaaagcagagtggaacccagtcaagacacttcctgatctatccggtaca
ggtagagcaacatgtgttaagtttggtccggacgccaaatacgtagcggtcggttcaatg
gaccgtaatctcaggatattcggcttgcctagcaatgacagcactgaagattctgcacaa
gattcatga
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