Brassica rapa (field mustard): 103844343
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Entry
103844343 CDS
T03449
Name
(RefSeq) pentatricopeptide repeat-containing protein At2g15820, chloroplastic
KO
K27936
pentatricopeptide repeat-containing protein, chloroplastic
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103844343
Spliceosome [BR:
brp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
103844343
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LAGLIDADG_2
PPR_2
PPR
PPR_long
PPR_3
PPR_1
HAT_Syf1_CNRKL1_N
DUF1955
Motif
Other DBs
NCBI-GeneID:
103844343
NCBI-ProteinID:
XP_009119390
UniProt:
M4DFG8
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All DBs
Position
A07:3922317..3925090
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AA seq
785 aa
AA seq
DB search
MIATRACDFSSPLSSASPSGAFVTVTIPNFNFFSPSLNPNIIRHRSSSSRRLLRRLSFSR
NETQSFPLPFAANSASHRSRTFVEHVAGTKESPHQTIEVYDFGDLESARNDLRNVATRRV
ETDVEVREIEDLPEEWRRSKLAWLCKEVPSHKAVTLVRLLNAQKKWVRQEDATYICVHCT
RIRENETGFRVYRWMTQQNWYRFDFGLATKLADFLGKERKFTKCREVFDDIMNQGRVPSE
STFHILVVAYLSSSEEGCFEEACSVYNRMIQLGGYRPRLSLHNSLFRALVSKQGGPSSDD
VRQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIERINYLREEMRKAGFEESKEVV
VSLLRAYAKEGGVEEVERTWLELLGLDCGIPSQAFVYKIEAYAKVSDFARALGIFREMEK
QLGGATVSGYHKIIEVVCKVHQVELAESLLEEFVETGKKQLLPSYIEIVKMYFDLGSHEK
LEKAFVECLEKCQPNQTIYNIYLDSLVNTGNLERAGDVFDEMKNNGTINVNARSCNTVLK
GYLDSGNHVKAKKIYELMSLKKYEVESPLMEKLDYILSLVRKEVKKPLSMKLSKEQREVL
VGLLLGGLRVESDRERKSHKIMFEFREKSQAHLILRQHIHDQFREWLPHSEEEDIPLEFS
SISHSCFGFYADNFWPNGRPEIPKLIHRWLSPESLAYWYMYSGYRTSSGDVILRLKGSVE
GVEKVVKALRAKSMECRVKKKGNVFWIGLQGTNSVLFWKLIEPHVLEDMKDYLRPAYEAI
DTDGD
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgatagctactagagcttgcgacttctcttcacctctctcctccgcctctccttccgga
gccttcgtcaccgtcaccatcccgaacttcaacttcttctctccctccctaaaccccaac
atcatccgccaccgcagcagctcctcgcgtcgcttactccgccgtctctccttcagtcga
aacgaaactcaatcctttccactgccattcgctgctaattccgcttctcaccgtagcaga
actttcgtcgaacacgttgcaggcactaaagaatcaccacaccaaaccatcgaagtctac
gatttcggagatttagagtctgctaggaacgatttgaggaacgtcgcgactcgtagagtc
gagactgatgtggaagtgagagagatagaagacttgccggaagagtggcgccgctccaag
ctcgcctggctgtgtaaagaagttccgtcgcataaagccgtgacgcttgtgaggctcttg
aatgctcagaagaaatgggttcgtcaagaagacgctacttacatctgtgtccattgcaca
cggattcgcgagaacgaaacaggattcagagtgtatagatggatgacgcagcagaactgg
taccggtttgatttcggtttagccacaaagctagctgacttcttagggaaagagaggaag
ttcacgaaatgtcgagaggtgtttgatgatattatgaatcaaggacgtgttccaagcgaa
tccacgtttcacattcttgtagttgcttatctaagtagctcagaggaaggttgtttcgaa
gaagcctgtagcgtttacaatagaatgattcaacttggaggttacagaccgcgtcttagt
ctgcataactctttgtttagagctttggttagcaaacagggagggccttcgagtgatgac
gttaggcaagctgagtttatcttccataacgttgtgacgactgggcttgaggtgcagaaa
gatatctatagcgggctaatctggctgcatagttgtcaagacgaagttgacatagagagg
ataaactatctaagagaagagatgaggaaggccggttttgaggagagtaaagaagtagtg
gtttcgttactcagagcgtatgctaaggaaggaggagtggaagaagttgagaggacatgg
cttgaattgcttggtttggattgcggtataccttctcaagcgtttgtgtacaaaattgaa
gcttatgcaaaagtaagcgattttgcgagagctttggggatatttagggagatggagaag
cagttaggtggtgcaacggtttctggataccacaagatcattgaagttgtatgtaaagta
catcaagtggaacttgcggaatctctcttagaagagtttgtagaaactgggaagaagcag
cttctaccttcatatatagagatagtcaaaatgtactttgatttgggttcacatgagaaa
ctggagaaggcttttgttgagtgcttggagaaatgtcaacctaaccagactatatataac
atatacttggattcattggttaatacaggtaaccttgagagggcaggggacgtttttgat
gaaatgaaaaacaatgggacaatcaatgtgaatgctagatcctgcaacaccgttttgaaa
ggatacttggattctggaaatcatgtgaaggcaaagaagatatatgagctgatgagtttg
aagaagtacgaagtcgagtcaccgcttatggaaaagcttgattacatccttagcttggtg
agaaaagaagtgaagaaaccgttgagcatgaagctaagcaaagaacagcgcgaggtattg
gtgggtttgctgttaggtggtttgcgagtggaatcagacagagagaggaagagtcacaag
atcatgtttgaattcagagagaagtctcaagctcatctgatattgagacaacacatacat
gatcagttccgtgagtggttgcctcattcggaggaggaggatataccattagaattctcc
tccatttctcattcatgctttgggttttacgctgataatttctggccaaatggtcgacct
gagattccaaaactgattcatcggtggctctcgcctgagtcactggcttattggtatatg
tacagtggatatagaacatcatcaggagacgttatcttgaggttgaagggaagtgtagaa
ggtgttgagaaggttgtgaaggctctgagagctaaatctatggaatgtcgggttaagaag
aaaggaaacgttttctggattgggcttcagggaacaaactcggttttgttctggaagcta
atagagcctcacgtcttagaagacatgaaagattatctaagacccgcttatgaggcaatc
gacaccgatggggactaa
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