KEGG   Brassica rapa (field mustard): 103844517
Entry
103844517         CDS       T03449                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103844517
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103844517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103844517
   03041 Spliceosome [BR:brp03041]
    103844517
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103844517
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103844517
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103844517
 Complex C
  U2 snRNP components
    103844517
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256
Other DBs
NCBI-GeneID: 103844517
NCBI-ProteinID: XP_009119554
UniProt: A0A397XHU9
LinkDB
Position
A10:complement(972946..974150)
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcgtactttaaggatttggtgggacaagaagtgacggttgagctgaag
aacgatttagcaatcagagggacacttcattcagttgatcagtacctcaacatcaagctc
gagaacactcgtgttgttgatcaggacaagtaccctcacatgttgtcggtgagaaactgt
ttcatcagaggatcagtggtgaggtacgtgcagttacctcctgatggagttgatgttgat
ttacttcacgatgcagctagaagagaggccagaggtggatga

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