Brassica rapa (field mustard): 103844791
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Entry
103844791 CDS
T03449
Name
(RefSeq) cyclic nucleotide-gated ion channel 1 isoform X3
KO
K05391
cyclic nucleotide gated channel, plant
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
103844791
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
brp04040
]
103844791
Ion channels [BR:
brp04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
103844791
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
IQ_SCN5A_C
IQ
Motif
Other DBs
NCBI-GeneID:
103844791
NCBI-ProteinID:
XP_009119850
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Position
A10:complement(9435336..9458101)
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AA seq
832 aa
AA seq
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MIFCTKIQCYSIILIVRVTHKLFMFGPKSIKELQRYKEEISNKVPFSSHKGFASKFHHQS
AGFKSDFFFQFLETQNACPSTVRFLLKEIEVLHSSHKEGYTTISCASTNSPTMNFRPDKS
VRFHDWKSDKASDVEYSEVPDGLYRRAISSISDKFHRSSLRIKMLRTSYSFKETVSKGIV
STHEILDPQGTFLQKWNKIFVLACIIAVSVDPLFFYVPVLDKANNCLDVDKKMQTTASVL
RSVTDIFYAIHMVFQFRTGFIAPSSRVFGRGVLVEDRRKIAKRYLSSHFIIDILAVLPLP
QMVISIIIPRMREPKTLHTKNMLKFIVFFQYIPRFMRIYPLYKQVTRTSGILTETAWAGA
AFNLFLYMLASHVFGAFWYLFSIERKTVCWKQAWNRAGRSKCDMRSLYCAREHYGNNTFL
NGSCPVLKPNATCFEFGIFLGALESGVVESHDFPQKFFYCFWWGLQNLSSLGQNLKTSTY
IWENCFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDNLR
KRIRRYEQYKWQETRGVNEENLLSNLPKDLRRDIKRHLCLALVMRVPMFEQMDEQLLDAL
CDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEHLGAGDFCGEE
LLTWALDPHTSTNLPISTRTVQALVEVEAFALKADNLKFVASQFRRLHSKQLRHTFRFYS
QQWRTWAACFIQAAWRRHVKKRLEESLREEENRLQDALAKQACGSSPSFGATMYASRFAA
NILRTIRRSGSVRKPRMLERMPPMLLLQKPAEPDFNSDDYMRIVPIYKNRSL
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgattttttgtactaaaattcagtgttactcaattattttaatagtcagagttactcat
aagttgttcatgtttggtcccaaatctataaaggagttgcaaaggtataaagaagagatt
agtaacaaagtccctttttcttcccataaaggcttcgcttccaagtttcatcatcagtcg
gcgggttttaaaagtgattttttttttcaattcctcgaaacccaaaacgcatgtccgagt
acggtccgatttctactcaaagaaatagaggttttgcattcctctcacaaagaaggttac
accacaattagttgtgcatcaacaaactctccaacaatgaacttccgaccagataagtcc
gttaggtttcacgactggaaatccgacaaggcttccgacgtggaatactccgaggttcca
gatggtttataccggagagcaataagctcaatctcagacaagttccacagaagctcctta
aggataaaaatgttgagaacatcttactctttcaaagaaacggtttcgaaagggattgtt
tccactcacgagatacttgacccacaaggaaccttccttcagaagtggaacaagatcttc
gttctagcttgtatcatcgctgtctccgtcgaccctttgttcttctacgtccctgtcctc
gacaaggccaacaactgccttgatgtcgacaagaaaatgcagacaaccgctagcgttttg
cgctccgtcaccgatatcttctacgccattcacatggttttccagttccgtacgggcttc
atcgctccttcttctcgtgtatttgggagaggtgttcttgttgaggacaggcgcaagatc
gctaaacgttacttgtcctcacatttcatcatcgacattcttgccgtgcttcctcttcca
cagatggtgatttcgataatcatcccgcgtatgagagagcccaagactttgcacacgaag
aacatgttgaagttcatagtcttcttccaatacataccgaggtttatgagaatctatccg
ctctataagcaagtgactagaacctcaggcatactcaccgagacagcttgggcaggcgct
gcttttaacctcttcctctacatgcttgctagtcatgtgtttggtgctttctggtatctc
ttctctatcgagcgcaaaactgtgtgctggaagcaagcttggaacagagccgggaggagc
aaatgcgatatgcggtcgttgtattgtgcacgtgaacattatggaaacaacactttcctg
aatggatcttgtccggttctgaaaccaaacgcaacatgtttcgagtttgggatattcctt
ggcgcacttgagtccggtgtagtggagtctcatgatttccctcagaagttcttctactgt
ttctggtggggtcttcaaaacctcagttcgctcgggcaaaaccttaaaacaagtacatac
atttgggagaactgtttcgctgtcttcatctctatctccggactggttctcttctctttc
ttgatcgggaacatgcagacgtatctgcaatcaacaaccacaaggctggaggagatgaga
gtcaagagaagagacgctgaacaatggatgtctcaccgtttgctccccgacaatctaagg
aaaagaatccgacgatacgagcagtacaaatggcaagagaccagaggcgttaacgaagag
aatctccttagtaacctccctaaagatcttagacgcgacattaaacgccatctctgcctc
gcccttgtcatgcgtgtccctatgtttgagcaaatggacgagcagcttcttgatgctcta
tgtgaccgtctgcaacctgtgctgtacacagaggaaagctacatcgtcagagaaggagat
cctgtagatgagatgctcttcataatgcgtggaaagcttctaacaatgacaacaaacggt
ggaagaaccggtttcttcaactcagagcatcttggagctggtgatttctgcggagaggag
cttctaacctgggctttagacccacacacctccacaaacctcccaatctcaacaagaacc
gttcaagctctcgtggaagtcgaagccttcgcactcaaagcagataacctcaaattcgtg
gcgtctcagttcagacgtctccacagcaaacagctgagacatactttcaggttctactcg
cagcaatggaggacttgggctgcttgcttcatacaagccgcttggaggagacacgtgaag
aagagactagaggagtctcttagagaagaagagaaccggttgcaggacgctttggctaaa
caagcttgtggaagctcaccgagctttggtgctacgatgtacgcgtcacggtttgctgca
aacatcttgaggactatacgaaggagcggttcggtgcgtaaaccgaggatgctggaacga
atgccacctatgctactacttcagaaaccagctgaaccggatttcaatagtgatgattat
atgcgtatagtgccaatatataaaaatagaagtctttaa
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