Brassica rapa (field mustard): 103845416
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Entry
103845416 CDS
T03449
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1 isoform X1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103845416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103845416
03016 Transfer RNA biogenesis [BR:
brp03016
]
103845416
03029 Mitochondrial biogenesis [BR:
brp03029
]
103845416
Enzymes [BR:
brp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
103845416
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
103845416
Transfer RNA biogenesis [BR:
brp03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
103845416
Mitochondrial biogenesis [BR:
brp03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
103845416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
Motif
Other DBs
NCBI-GeneID:
103845416
NCBI-ProteinID:
XP_009120517
LinkDB
All DBs
Position
A10:13312629..13317279
Genome browser
AA seq
654 aa
AA seq
DB search
MAFFDLSIPYSYPSPSGGKELIVPHKLRVKLATKAMELGYVGIAHSHSIEGAMSEKDSCT
IPLLTLGSLVKAAPRLASSVAFHRGLLNVPRSTPFRQYTRVTVILESKAQCLALNSGNPV
LKSYDIVAVRPMNQYAFDQACAKAEVDVISIDFSNLQFRLMHPTVKAAVKRGVYFEIKYS
LLLSDAEKRRQVISNAKLLVDWTKGKNLIISSGSPSVTELRGPNDVINLMSLLGLSSERA
RAAISVNCRNMIAKVLKKKRFHKEAVKVELLSSSETFSLEQPLSGDCMKWDPLSSGEGDL
LLEDLAKAFEATTRPPVAHKAFDFTSDRNGLPSRGFRIGNILGTEPLTQSPAAKIIDGPV
LCKNQVSEVCMADSVSSVDNLGENETISQIDMLVSEDDNKVEPTTNVPLSSQGRGVLVQD
EAAALFSLIRCTESDAASDVNMQTELDSEDKSMSLSKSDHGIQQSHVENLNMETIGVDDE
FPVDGANKEGAGFCHANIEQPTSSGVDEMKIDGSLEANHNEYMEVTVEDVTHETGDNNII
LPNLSSSETTELLRESSNSLISPEAVGQDHDQLSRLEFSETELGEEPSVQYDITMEDKKE
TETNQQAHVKYNARNSGKARAKRSWVRLTILQPLKPFLLQRFKRISKRRKHIRA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcttcgacctaagcatcccctacagctacccatcaccatcaggcgggaaagaa
ctcatcgtcccacacaaactccgcgtaaagctcgccacgaaagccatggagctcggctac
gtcggaatcgcgcacagccactcgatcgaaggcgcaatgtcggagaaagactcctgcacg
atccctctcctcaccctcggatctctcgtcaaggccgctccgcgactagcttcctccgtc
gcgttccaccgcggcttactcaacgtccctcgatccactccgtttcggcagtacacgcgc
gtcaccgtgatactcgagagcaaggctcagtgtctggcgttgaactcagggaatcctgtt
ttgaagagctacgatatcgttgcggttaggccgatgaatcagtacgcgttcgatcaggct
tgtgcgaaagctgaggttgatgttatctcgattgatttctcgaatttgcagtttcggttg
atgcatccaacggttaaagctgctgttaagcgtggggtttactttgagatcaagtactct
cttctcttgagcgatgctgagaagaggagacaagttatatccaatgctaagttactggtg
gattggactaaggggaagaatctgattatatcgagtggttctccttcagtcacggaactt
agaggtcctaacgatgttattaatctcatgtcattgcttggactctctagtgagagagcc
agagctgcaatttcagttaactgtaggaatatgatagccaaggttttgaagaagaagcgg
tttcacaaagaagctgtcaaggttgagttgctttcttcaagtgaaacgtttagccttgaa
cagcctctgtctggagattgtatgaaatgggatcctctttcgagcggcgaaggtgacttg
cttttggaagatctcgcaaaggcttttgaagccaccacacgtcctcctgtggcgcataaa
gcgtttgatttcacttctgatcgtaatggcttgccgtcacgtggtttccggatcggtaat
attctaggaactgagcctttgactcagtcacctgcggctaagattattgacggaccagtt
ctctgtaagaatcaagtttctgaagtgtgtatggctgattcagtttcatctgttgataat
ctcggggaaaacgaaaccattagccaaattgacatgctggtttctgaagatgacaacaaa
gtggaacctacaacgaatgtcccactgtctagccagggacggggagttttggtgcaagat
gaagcagctgcattattttcattgataagatgtacagagtcagatgcagcttctgatgtt
aacatgcagactgagttggattctgaagataaatcaatgtcgctatcaaaaagtgatcac
gggatccaacaaagtcatgttgaaaatttaaacatggaaactattggtgttgatgatgaa
ttcccagtggacggagccaacaaagaaggagctggtttttgtcatgctaatattgagcaa
cctacatcctctggtgttgatgagatgaaaatcgatggttctttggaagcgaatcacaac
gagtacatggaggtgacagtggaagacgtgacgcatgaaacaggtgacaataatattatt
cttcctaacttatcctcctctgagactaccgaattactaagagaatcgagtaactctctc
atcagtccagaggcggttggacaagaccatgaccaattatcaaggttagagttcagtgag
acagagcttggggaagagccatcggttcaatacgatataaccatggaagacaagaaggaa
accgaaactaatcaacaagcccatgtcaagtacaatgccagaaactcaggtaaggcacga
gctaagaggagttgggttagattaacgatactacaacctttgaagccttttctactacaa
cgtttcaaacgaattagtaaaagaagaaaacatataagagcttga
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