Brassica rapa (field mustard): 103845854
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Entry
103845854 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103845854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103845854
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103845854
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103845854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
103845854
NCBI-ProteinID:
XP_009120998
LinkDB
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Position
A10:15566879..15572334
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AA seq
836 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDSDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSISRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSLAAPVPAPQVRSISLPDDTTVLDSNSETLPKTPPAKN
GASLNSAPSTPVGGRSSLNVPVSNVPNAPVVLSTSIPVQTSTESMGSLSPVAAKEEDATT
LSSRKPPSSVADAPLRGIGRVSSPNQSQPSQPLSPSPANGARISATSAAEVAKRNIMGVE
SNVQPLSSPSKMVLSPAAKVNDGTASDSNPGDVAASISRAYSPSIVSGSQWRPGSPFQSQ
SETVRGRTEIAPDQREKFLERYQQVNHGNLLGMPSLSGGNEMQFSSQQQNPLLQQSSAMS
PHGSMGFQAPGFSVMSSASLQQPSNAMTQQLGQQPSVADVDHGRNDDQLQQNLPDDSSSL
AASKTIPNEDDSKGLFDTPSGMPSYMLDQVQVTRDGPDFSPGQPIQPGQPSSSLGVIGRR
SNSELGAIGDPSALGPMHDQMHNLQMLEAAYYRLPQPKDSERPRPYTPRNPAITPQTFPQ
TQAPIVNNPLFWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF
QRHKEPKIATDEYEQGAYVYFDFQTPKDESQDGGWIQRIKNEFTFEYSYLEDELAV
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcggaaattacaaggcgagatagatcgggtgctgaagaaggttcaggaa
ggcgttgatgtcttcgacagcatctggaacaagtggaatgtatatgattcagataatgta
aaccaaaaggagaagtttgaggcggacttgaagaaggagatcaagaagttgcagcggtat
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgca
tcttatgagcagtccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aagatctgtgagaaagagaccaagactaaagccttctctaaggaaggactgggtcagcaa
ccgaaaactgacccaaaagagaaagcaaagtccgagacaagagattggttgaacaatgtg
gtgagtgaactagagtcacagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagacaaggccacccagactgacacatcttgaaacatctatttcaaggcac
aaagatcatataataaagttggaattgatcttgaggcttctggacaatgacgaactaagt
ccagaacaagtaaatgatgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgacgagctgtatagcacgctgccgcttgatgaggtg
gagggtcttgaagatttagttactgctggcccccttgtcaagggtactcctctgagcatg
aagagttctttggcagcaccagtaccagcacctcaagttcggagcataagtttgccagat
gacacaactgtactggatagcaattcggagacacttccaaaaacccctcccgcaaagaat
ggcgcaagccttaactcagcaccatcaacacccgttgggggacgttcaagtttgaatgtt
cccgtcagtaatgttccaaatgcaccagttgtcttatcaacttctattcctgttcaaact
tccacggaaagcatgggaagtttgtctccagtggctgcaaaggaagaagacgcaacaacc
ttgtcttcccgtaaaccaccctcatctgttgctgatgctccattgaggggcattggtagg
gttagtagccccaaccagtcccaaccaagtcagcctctgtctcctagtcctgctaatgga
gctcgcattagtgctacttcagcagctgaagttgcaaagaggaatataatgggagttgag
agcaacgtccaacctctaagttctccgagcaaaatggtattgtcaccagccgcgaaggtt
aatgatggaactgcctctgatagcaaccccggtgatgttgcagcaagtatcagtagagca
tattcaccgtctattgtatctggttcgcagtggaggcctgggagtccctttcagagtcag
agtgaaacggtccgtggaagaactgaaatagcaccagatcaaagagagaaattcttagag
cggtaccagcaagtaaaccatgggaacctcttaggcatgccttctctatctggaggaaac
gagatgcagttttcttcacaacagcaaaatcctcttttacagcagagttctgccatgtct
cctcatggtagcatgggatttcaggcaccaggttttagtgtcatgagttctgcctcctta
cagcagccgtcaaatgccatgactcaacaattgggtcagcagccttctgtcgcagatgta
gatcatggcagaaatgatgatcagcttcaacaaaacttacctgatgattcatcttcctta
gcagcttcaaaaaccattccgaatgaggatgattctaaaggtctatttgatactccgtcg
ggaatgcccagctacatgttggatcaagtacaggtaactagggacggtcctgatttctct
cctgggcaacccattcaacccggccaaccttcaagcagcctcggtgtcattggacgtaga
agtaactctgaactaggagccattggtgacccttcagctttagggccaatgcatgatcag
atgcacaatctccagatgcttgaagctgcgtactatagacttcctcaacccaaagattca
gaacggcctagaccctatactccgaggaacccagcaatcacacctcaaacgtttccccaa
acacaagcgccaatcgtaaacaaccctttgttctgggaacgtttaggcagcgatgcttat
ggaaccgatactttgttctttgcattttattatcagcagaactcatatcagcagtatcta
gcggcaaaagagctgaagaaacagtcatggagataccacagaaagttcaacacatggttt
cagagacataaggagccaaagattgcaacggatgagtatgaacaaggagcctatgtttac
tttgatttccaaacccccaaagacgagagccaggacggaggatggattcaaaggatcaaa
aacgagttcacgtttgaatacagttatcttgaagatgaactcgccgtatag
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