Brassica rapa (field mustard): 103846266
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Entry
103846266 CDS
T03449
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103846266
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
103846266
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
103846266
NCBI-ProteinID:
XP_009121410
UniProt:
A0A397XLH4
M4CWH5
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Position
A10:15945721..15949994
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AA seq
434 aa
AA seq
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MKKSSLFFVLLCLFQISKLDFCLAGSVHMVNNNGHERHRFISVTDFGAVCDGKTDDTQAF
LKAWEAVCNGFSNKSFLVPLGKTCMLKPLTFAGPCTSSSITFVIRGNIVAPGYTWNVGNF
PAWISFDSINGLVVKGGGVKGGGTLDSRGSVWWGSEHAQDKESPTAMHFNNCNGLRMYNL
QHLNSPRNHIGLTGSKNISISGLNLTAPGDSPNTDGIDISRCIGVDIRDSVISTGDDCIA
INSGSSYINITGLFCGPGHGISVGSLGRNGEFASVEEVRVKNCTLSNTMNGVRIKTYQNG
LGYARKISFEDIRMVDSKNPIIIEQNYLNRGKIEEVSFENSNYQNRGGKNRFYKTESGNG
RGVKVSDVRYSRIYGSSASDDAVTFNCNADLGCEDIVMDHVDIVSAKAGHAVSASCKNVR
GSYFSSPVSCIKKH
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtcttcgttgttcttcgtattgctatgtttgtttcaaataagcaaattagat
ttctgcttagcaggaagtgttcatatggttaacaacaatggacatgaacgtcatagattc
ataagtgtaactgatttcggagctgtgtgcgatgggaagaccgatgacactcaggcattt
cttaaggcatgggaagctgtatgtaacggattcagtaataaaagctttctagtgcctcta
ggaaaaacgtgcatgcttaagcctcttacgttcgcaggtccttgcacgtcttcctctatc
acctttgtgataagaggcaatattgttgcaccgggttacacctggaacgtgggaaatttc
cctgcatggattagttttgatagtatcaacggtctagttgtcaaaggaggaggtgtcaaa
ggaggaggcaccctcgacagtcgcggttctgtgtggtggggatccgaacatgctcaggat
aaggagagtcccaccgcaatgcatttcaacaactgtaatggtctaaggatgtataatctc
caacacttgaacagtcctcggaaccacataggtctaaccggctcaaagaacatcagcatc
tcgggacttaatttgactgcacctggtgatagtcccaatacggatggtatagatatatcg
aggtgtataggagtcgacatacgtgactcagtgatatccaccggagatgactgcattgcc
attaattctggttcctcttatatcaacataaccggccttttttgcggtcccggtcatggc
attagcgtgggaagccttgggagaaatggagagtttgcaagcgttgaagaagtgagagta
aagaactgcactttgtcaaacacaatgaacggtgtccgaatcaagacataccagaacgga
ttaggatatgcacggaaaatctcatttgaggatataaggatggtggattcaaaaaacccc
attatcatcgagcagaattacctgaaccggggcaaaatcgaagaagtaagctttgagaat
agtaactatcaaaaccgtggtggtaaaaatcgtttttacaagactgagtctggtaatgga
agaggcgtgaaagtgagcgatgttcgttacagtagaatctacggctcatctgcgagcgat
gatgccgtcacgtttaactgcaatgcggacttgggatgtgaagatattgtgatggaccat
gtggatattgtttcagcgaaagcaggtcacgcggtgtcggcttcttgcaagaatgttcgt
gggagttattttagttcacctgttagttgtattaaaaagcattag
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