Brassica rapa (field mustard): 103846358
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Entry
103846358 CDS
T03449
Name
(RefSeq) ubiquitin receptor RAD23c-like
KO
K10839
UV excision repair protein RAD23
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03420
Nucleotide excision repair
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103846358
09124 Replication and repair
03420 Nucleotide excision repair
103846358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
brp03051
]
103846358
03400 DNA repair and recombination proteins [BR:
brp03400
]
103846358
Proteasome [BR:
brp03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
103846358
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
103846358
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
UBA
XPC-binding
Rad60-SLD
Dsc3_N
TECR_N
UBA_7
Ubiquitin_2
Rad60-SLD_2
Ubiquitin_4
HBS1_N
Motif
Other DBs
NCBI-GeneID:
103846358
NCBI-ProteinID:
XP_018511019
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Position
A10:16302378..16305200
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AA seq
342 aa
AA seq
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MKIFVKTLKGARFEIQVKPEDSVADVKKNIETVLGVNAYPAAEQRLIHKGKVLKDETTVE
ANNVSEKSTIGVMKRKPASASLKPLYESISENNIQWILEMSGGEWERDLVEDALYLAYND
IDKAVEYIYFGLPVDSEYPSITEFENVRPRVQSDPSLLEELLVQIEDLFITEGETHQEPD
ERPSAADLEQSLDFARYTQEYDREYLRALARSHPSIVKDFVEMVHEDNPLFFQFIRDNKA
DILRLLREGGTGGTEMEQPREHPAVETNEPKNGGDGGNQVGESKETEVEVVTPEDYELIE
RLEALGFERGDAAVAYFACNRNLQVAANHLLGYKHKHEPRRE
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaagatattcgtcaaaactctgaagggagctcggttcgagatccaagtcaaacccgag
gattcggttgctgatgtgaagaagaacatagagacggtgctgggagttaatgcgtatcct
gctgcagaacaaaggcttattcacaaggggaaagtgctgaaagatgagacaacagtagag
gctaacaacgtttccgagaaaagcactattggcgttatgaagagaaaacctgcatctgct
agccttaaacctctgtatgaaagtatttcagagaataacattcagtggattcttgagatg
tccggaggagagtgggagcgtgacctggttgaggatgcactctatttggcatataatgac
attgataaagctgtggaatatatttactttgggttgccggtggacagtgaatatccttct
ataacagagttcgagaatgtacgacctcgggtgcagtcagaccctagtctcttagaggag
ctcctggtgcagattgaagatcttttcataacggagggtgaaactcatcaagaacctgat
gaacgtccttcagcagccgacctagaacagtcacttgatttcgcgcgttacactcaagag
tacgatcgcgagtatctacgagctttggcgcgatcacaccctagtatcgttaaggatttt
gtggagatggtacatgaagacaatccgctattttttcagtttattcgagacaacaaagca
gacatcttacgcttactacgtgaaggaggaacaggcggcaccgaaatggagcagcctcgt
gaacacccagcagtcgagaccaacgaaccaaagaatggaggagatggtggcaaccaagta
ggagagtctaaagaaaccgaagttgaagtcgtcacccctgaggattacgaattgatcgaa
cggctagaagcattgggatttgagagaggtgatgcggcggtggcgtacttcgcttgcaat
aggaacctccaagtggctgcaaaccatcttctcggttacaagcacaagcacgagcctcga
cgagaatga
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