Brassica rapa (field mustard): 103846405
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Entry
103846405 CDS
T03449
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103846405
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
103846405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
IFRD
zf-HC5HC2H
PHD_4
zf-RING_16
PHD-1st_NSD
Motif
Other DBs
NCBI-GeneID:
103846405
NCBI-ProteinID:
XP_009121568
LinkDB
All DBs
Position
A10:16484220..16495485
Genome browser
AA seq
1850 aa
AA seq
DB search
MSNPSSSGWDSSSNLTQFGIGLANTVQSDVASHLPLPSLPIFCGSTQPGEFKLFDEAGEG
VGGNRSLNRSEILSQSRRIANMLEETDVSYLDLRNEARALNCNSAEPLQLYDQVLRCNPG
AFEYATPGPTCEPICTSEEPQHRSSEPSVPVKFQRQADHRLGGSIEPEPVKKVLRSNHAE
DHSWHSKPLINQLPRDDITTLDSRPETVTMNESSASKKSKGKKKRKDGAGSGAGPGASSV
QPDSSVLQESIVKSFCEMLEDFCGRAEMSGDDRDGAEWSVVPVDEVRVLVAELMTIRSKM
LLHMVPVDILSRLLHTLDHQIHRAEGLSINSEHSDAYSVGLVLGALESIHASLAVMANSD
MPKQLYKEEVIERILEFSRHQMMAVMSAYDPSYRSASKPADNVAFEGDDDDDPDPDMSSA
SKRRRTGKSGKVKKSGVNRISGAVNTALQKLCTILGLLKDLLFVERLSDSCILQLLKTST
TTFLVENIQLLQLKAISLIGGIYNSYAQHRTYVIDELSQLLWKLPSSRRVLRTYLLPDEE
QKQIQMVTALLIQLVHNSTSLPETLRQASCANSILETPVDDDYLTKCHEAVTETCCLFWT
RVLERFASAKAQDASEIKVMIENLVNDLLTALNLPEYPSVSPILEVLCVILLHNGGLKSK
DVSARSMAIDLLGTIAARLKQDSVLCSGDRFWALLESDTETKLDQSVTKDCALCLGKRAG
NLLGCQICQRRFHADCLGLKEVDIPSRNWHCPFCISKRQLLVLQSYCKMDTKGTVMLESE
EDPNMVTQTEVVQQMLLNYLQDAGSVDEVHTFICWFYLCLWYKDVPKSQKKFKYYIARLK
AKSIIRNSGATTSFLTRDAIKKITLALGLNSSFSRGFDKILHMLLASLRENSPVIRAKAM
RAVSIIVEADPEVLCDKRVQLAVEGRFCDSAISVREAALELVGRHIASHPDVGLKYFEKV
AERIKDTGVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDESSIQDLVCKTFYE
FWFEEPPGHHTQFASDASCIPVEVETKTKQMVGLLRRTPNHQLLVTIIKRALALDFFPQA
TKAAGINPVALASVRRRCEMMCKCLLENILQVEELSRGEGDVQVLPYVLALHAFCLVDPG
LCTPASDPTKFVITLQPYLKSQVDSRIGAQLLESIIFIIDSVLPMIRKLPFSVTEDLEQD
LKHMIVRHSFLTVVHACVRCLCSVSKLSGKGVSVVEHLLQFFLKRLEAQGPDNNQIAGRS
LFCLGLLIRHGNSLISTSGGRKFNLSGCLSLFKRHLRVEDFSLKVRSLQALGFILIARPE
YMLEDDIGKIIESTLSDEANGRMKMQALQNMYDYLLDAEKQLGSDKAGDITVNPIEQGGH
TVPVAAGAGDTNICGGIVQLYWDKILGRCLDFDDQIRQIALKIVEVVLRQGLVHPITCVP
YLIALETDPLEANQKLAHHLLMNMHEKYPAFFESRLGDGLQMSFIFMQSISHVPSESNQN
LQQKGSTNMSGKNDHTNTTLTQARLGVSRIYKLIRGNRISRNKFMTSIVRKFDNPTWSGS
VISFLMYCTETLALLPFTTPDEPLYLVYSINRVIQIRAGAIESNLKALLHKDSAKPQHGN
GTYQQDPIPGQIHMMDLNTRIQEEPTHWNSYGQVDLNGIVYQDPRDQFNSYQIHNGEANV
NKMTSSDPPALSTDDLQKIQVDCLSAIALQLLLKLKRYLKVTYSLNDDRCQAYSPTEPLK
PGDPLSKQNVAFDLSETRTDLPSTYQDLVLRYQEFKNAMREDTLDYTIYSSNVKRKRPTP
RKSSRSAKKAVAYNEDDDDDDDGDRGWNGGGSSGMTSRRLNYSTRNSNRR
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacccaagcagttcgggatgggattcaagttcgaatttgactcagttcgggatc
ggtttggccaatacagtgcagtcggatgttgcttctcacttgccgctcccctcgttaccc
atattctgcggctcgactcagcctggggagttcaagctgttcgatgaggctggcgaaggt
gttggcggtaacaggtcgttgaaccgcagcgagattctctcgcagtctaggagaatcgcg
aatatgcttgaagaaactgacgtttcttatctggatcttagaaacgaggctagagcgctg
aactgtaattccgcggagcctttgcagttatatgaccaagttctacgatgcaatcctgga
gcatttgagtatgccacccctggcccgacctgcgaaccaatctgtactagtgaagagcct
caacatagaagttctgagccaagtgttcctgtcaagtttcaacgacaggccgatcatcgt
ctaggtgggagtatcgagcctgagcctgtgaaaaaggtattacgatcaaatcatgctgaa
gatcatagttggcattccaaacctttgataaaccagttaccaagagatgatattacaact
cttgactctcgaccggaaacggtcaccatgaatgaatcttctgcttcgaagaagtcaaag
ggaaagaagaaacgtaaagatggcgctggctctggcgctggccctggcgcgtcttcagtt
cagccagattcatccgtgcttcaagagtccatcgttaaaagcttttgtgagatgctggag
gacttctgtggcagagctgaaatgtctggtgatgatagggatggagcagagtggtcagta
gtgcctgttgatgaagttcgtgttcttgtggctgagttgatgactataaggtcaaaaatg
cttctgcatatggtacctgttgatattctgtcgaggttattgcacactctggatcatcag
atacatagggcagaaggcttgtccattaatagtgagcattcagatgcatattcagtgggg
ttggttcttggtgcccttgagtccatccatgcatcgcttgcagtgatggcaaacagtgat
atgccaaagcaactctacaaggaagaggtaattgagagaattctggagttttctaggcac
caaatgatggctgttatgtctgcttatgatccatcataccgcagcgcaagtaaaccggca
gataatgtggcatttgaaggtgatgatgatgatgatcccgatcctgacatgagctcagcc
agtaaaaggcgacgaacgggaaaaagtggcaaagtgaagaagtcgggagtgaacaggatc
tctggagcagtgaatactgcattacagaaactttgcactattcttggcttactcaaggac
ctgttgttcgtagaaaggctgtctgacagttgcattttacaactgttgaagacaagtact
acaacatttttggtggaaaatatccaacttctgcaactcaaagcaattagcttaattggt
ggtatatataattcatacgctcaacaccgaacgtatgtgatagatgagttatctcaattg
ctatggaagttaccttcctcaagacgagtgctgagaacgtatcttctccctgatgaagaa
cagaagcagattcaaatggtcacggctttactcattcagttggttcacaacagcacaagc
cttcctgaaacactgagacaggcttcatgtgcaaactctatactggagacgcccgttgat
gatgactacctaactaaatgtcatgaggcggttacagaaacatgttgccttttctggact
cgtgtccttgaacgatttgccagtgcaaaggctcaagatgcctctgagataaaagtgatg
attgagaaccttgttaatgatttactgacagcattgaatcttcctgaatatccatcagtg
tctccgattcttgaggttctctgcgtcatacttctgcataatggagggttgaaatcaaaa
gatgtctctgcccggtcaatggccatcgacttgctgggtacaattgctgcaaggttgaaa
caggattctgtcctctgcagtggagacagattctgggcgctactagaatcagatactgaa
accaaacttgaccaatctgttacaaaagattgcgctctatgtttaggtaaaagggctgga
aacttattaggctgtcaaatttgtcaaaggcggtttcatgcagactgtttgggtttaaag
gaagtagacattccaagtcgaaattggcattgtccgttttgcataagcaagagacaactt
cttgtactgcagtcttactgcaagatggacaccaagggcactgttatgttggagtcggaa
gaagatccaaatatggttacacagacagaagtggtgcaacagatgctcttaaattatctt
caggatgctggatctgttgatgaagtgcatactttcatttgctggttttatctttgcctt
tggtataaagatgtcccaaaatctcagaagaaattcaaatattacattgccagactcaaa
gcgaagtcaataatccgtaactctggagcaactacttcgttcttgacaagagatgctatt
aagaaaattactttagctcttggacttaacagctctttttctagaggatttgataagatt
ctacacatgctcctggctagtttaagagagaactctcccgttattagggccaaagctatg
cgagcagttagtataattgttgaagctgatccagaggtattgtgtgataagcgtgttcag
ttggctgttgaaggaaggttttgtgattctgcaatatctgttagagaagcggcactggaa
cttgttggtaggcatattgcatcacatcctgatgttggtttaaagtattttgagaaggta
gctgaaaggattaaggatactggagtgagtgttcgaaaacgagccatcaagataatacgt
gacatgtgtacttcaaatcccaacttctctgaatttacaagtgcatgtgccgagatatta
tctcgtatcagtgatgatgagtctagtatacaggatcttgtgtgcaaaactttctatgaa
ttctggtttgaggagcctccagggcatcatactcagtttgctagtgatgctagctgcatt
ccagtggaagtggaaacgaaaactaagcaaatggtggggttgttaaggaggaccccgaat
caccagcttcttgtaacaattattaagcgtgccctggcccttgattttttccctcaagca
actaaagctgctggtatcaacccagttgctcttgcatcggtacgccggcgctgcgagatg
atgtgcaagtgcttactggaaaatatattacaggtagaagaacttagccgtggagaggga
gacgtgcaagtgcttccttatgtacttgctttgcatgctttctgtctggtggatcctggg
ctgtgtacaccggcttcagaccctacgaagtttgttattaccctacagccgtatttgaag
agtcaggttgatagtagaataggagcacagttactagagagtattattttcattatcgat
tctgttctacccatgatccgcaagcttccttttagtgtcacagaagatctggagcaagat
ctaaagcatatgattgttcggcattcatttctaacggttgttcatgcatgcgttaggtgt
ctttgttctgtgagtaaattgtcgggaaaaggtgttagtgtagttgagcatcttcttcag
ttctttttaaagcggctggaggcccaagggcctgataacaaccagattgctgggcggtcc
cttttttgtcttggcttgcttattcgccatggaaactctcttattagcacctcaggtggc
aggaaatttaatctctccggctgtctcagtttgttcaaacgacatcttcgcgtggaagat
ttttcgttgaaagtcaggtctctgcaggctctaggttttattctaattgcgcggcctgag
tacatgttggaagacgacattggaaagataatcgagagtacattatctgatgaagcaaac
gggcgtatgaagatgcaagcattgcaaaacatgtatgattaccttcttgatgcggaaaaa
caattgggatccgataaagctggtgatatcacggttaacccaattgagcaaggtggacat
actgtacctgtggccgctggtgcaggtgacaccaacatttgcggaggcattgtgcagttg
tattgggataagatattaggtagatgcttggactttgatgatcaaattcgccagattgct
ctcaagatagtggaagttgtgctacgtcaaggtcttgttcatcctattacatgtgttcct
tatttgattgccctggagacagatcctctcgaggccaaccaaaagctggcccatcattta
ctaatgaatatgcatgagaagtatccggcattttttgaaagccgtctcggtgacggactt
caaatgtcgttcattttcatgcaatcgataagccatgtcccttcagaatcaaatcaaaat
cttcagcagaagggttcaacaaatatgtcgggaaaaaatgatcatactaatactactctc
acacaagctagacttggagtctctaggatctacaagcttatccgtggaaaccggatttct
cggaacaagtttatgacatctattgttcgcaagtttgataatccaacctggagtggctca
gtgatatcctttctgatgtattgcactgaaacccttgcgttacttccattcacaacacct
gatgagccgctctatcttgtatattccataaaccgagttatacaaatccgggctggtgca
atcgagtcaaatttgaaggctttgttacacaaagattccgcaaagcctcagcatggaaat
ggaacgtaccaacaagatccgattcctggacagattcacatgatggacttgaacacaaga
atccaagaagaaccaacgcattggaattcgtatggtcaagttgatctcaatggaattgta
taccaagatccgagggatcagtttaattcatatcaaatccataatggggaagcaaatgtg
aacaaaatgacatcatccgatcctcctgcattgtccaccgatgatctgcagaaaattcag
gttgattgcttatcagctatagctttacaacttcttttgaagctcaagagatacttaaaa
gtcacgtacagcttaaatgatgaccggtgccaagcctattctccaacggaaccattgaaa
ccaggagatcctctgtccaaacagaatgttgcctttgacctcagcgaaactcgtactgac
ttgccttcaacatatcaagacttggttctgagatatcaggagtttaagaacgcgatgaga
gaagatacacttgactacaccatttattcatcaaacgtcaagagaaaacgcccaacacca
agaaaaagctcaagatctgctaagaaagcagtagcctacaatgaggacgatgatgatgac
gacgatggtgacagaggctggaatggaggaggaagcagtggtatgacttctcggagacta
aactacagtaccagaaatagcaacagaaggtga
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integrated database retrieval system
