Brassica rapa (field mustard): 103846414
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Entry
103846414 CDS
T03449
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04120
Ubiquitin mediated proteolysis
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103846414
04120 Ubiquitin mediated proteolysis
103846414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103846414
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103846414
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
U-box type E3
103846414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
103846414
NCBI-ProteinID:
XP_009121577
UniProt:
M4CWV3
LinkDB
All DBs
Position
A10:16523370..16528952
Genome browser
AA seq
1041 aa
AA seq
DB search
MSTTKPQRSPSEIEDIILRKILHVTLTESASDPRVVYLEMTAAEILSEGKPLLLSRDLME
RVLIDRLSGNNNNFPSSSSAAEPPFPYLIGCYRRAYDESKKIQSMKDKNLRSEMEIVTRD
ARRLAVSYCRIHLANPELFGGSDDARKAKKRRNASPLLPLIFSEVGSGSLDMFGGGGGSS
SGGVQCPPGFLDEFFKDSDFDNLDLILKELYEDLRSSVINVSVLGDFQPPLRALKYLVSL
PVGAKSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSGA
SERRPADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRECVLQFLSEVINANASRAHI
QVDPVSCASSGMFCNLSAVMLRLCEPFLDPHFTKRDKIDPKYAFYGNRLKLSDLTALHAS
SEEVSEWIDKDNTAKGNDAGNENESRLLQSKEATSSSGNASRQNSKSTTKYTFICECFFM
TARVLNLGLLKALSDFKHLSQDISRGEDNLATLKAMRDQAPSPQLELDITRMEKELELYS
QDKLCHEAQILRDGDFIQRAISFYRLVIVWLVGLVGGFKMPLPSTCPMEFSCMPEHFVED
AMELLIFASRIPKALDGVLLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCWMPRSSGS
SATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSH
RNAWRRIAKEEEKGVYLNFLNFLVNDSIFLLDESLNKILEIKQIEAEMSNTAEWEQRPAQ
ERQDRTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQ
LVGPQRKSLSLKDPEKYEFRPRQLLKQIVRIYVNLARGDSENIFPSAISSDGRSYNEQLF
DAGADVLRRIGEDGRIIQEFMELGTKAKAAASEAMDAEAALGEIPDEFLDPIQCTLMRDP
VILPSSKTTVDRAIIQRHLLSDNHDPFNRAHLTSDMLIPDIDLKARIDEFVRTHQSKKRS
SGEDSSNKERIQTTSSDMLID
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccaccaagccccaaagatctccatccgaaatcgaggacataatcctccgcaag
atcctccacgtaaccctaaccgaatccgcctccgatcctcgagtcgtctacctagagatg
acagccgccgagattctcagcgaagggaaacccctcctcctctcccgcgacctgatggag
agagtcctcatcgaccgcctctccggcaacaacaacaacttcccctcctcctcctccgcc
gccgagccgcctttcccgtacctaatcggctgctaccgccgcgcctacgacgagtccaag
aagatccagtcgatgaaggacaagaatctgagatcggagatggagatcgtcaccagggac
gcgaggaggctcgcggtttcgtactgcaggattcacttggcgaatccggagttgtttggg
ggatcggatgatgccaggaaggcgaagaagaggaggaacgcgtctccgttgcttccgttg
atcttctcagaggttggttctggctcgttggatatgtttggtggtggtggtgggagtagt
agtggtggtgttcagtgtcctcctggttttttggatgagtttttcaaggactcggatttt
gataacttggatttgattctcaaggagttgtatgaggatttgaggtcttcggttattaat
gtgtctgtgcttggagatttccagccgccgttgagggcgcttaagtatcttgtaagcttg
cctgttggagctaagtctttggttagtcatgagtggtgggttccgcgtggggcttatatg
aacggtcgagctatggagttgacgagcattctcggtcctttctttcatattagcgcattg
cctgataatactctgttcaagagtcaacctgatgttgggcagcagtgtttctctggagca
tcggaacgtcgtcctgcagatttgttgtcatccttctctacgatcaaaaactttatgaat
attttgtacagtgggctgcatgatgtactgatgattttacttaaaagcaccgatacacgt
gagtgtgttctacagtttctttcggaagtgatcaatgcaaatgcgtcgagagcccatata
caggttgatccagtttcttgtgctagctcaggcatgttttgcaacctcagcgcagtcatg
ctccggctatgtgaaccatttttggacccgcattttactaaaagggataagatcgatcca
aaatatgcattctatgggaatcgcttaaaattaagcgacttgactgctctccatgcatca
tccgaggaagtttctgagtggattgacaaggataatacggcaaaaggaaatgacgctgga
aacgagaatgaaagtcgcttgttgcaatccaaagaagccacaagttcaagcggtaatgct
tcacggcaaaattcaaagtcaacgacaaaatacactttcatttgtgaatgcttctttatg
actgcaagggtcctcaatttgggtctcctaaaagcactctcggacttcaaacatctttct
caggacatctcgagaggcgaagacaatcttgcaacattaaaagccatgagagatcaggca
ccctctccacagttagaacttgacataactagaatggaaaaagaattagagctgtattct
caggacaagctttgccatgaggctcaaatattaagggacggagactttatccagcgagct
atctctttctatcgattagtcattgtttggttagttggacttgttggtggctttaagatg
cctttaccttcaacttgtcccatggaattctcctgtatgccggagcattttgttgaagat
gccatggagttactgatatttgcttcaagaatccccaaagctttggatggggtgctgttg
gatgactttatgaacttcataataatgttcatggcaagtccagaatatgttagaaacccg
tatctgagagcaaagatggttgaagttctgaactgctggatgccacgttcaagtggttct
tctgctacatctactctatttgaaggccatcagttatcgctcgagtatcttgtcaggaat
ttactgaaactatatgttgacattgagttcacgggttctcacactcagttctatgacaag
ttcaacattcgccacaacattgccgagcttctagagtatctttggcaggtgcctagtcac
cgaaatgcgtggagacggattgcaaaagaggaagagaagggcgtgtacttgaacttctta
aacttcttagtcaatgatagcatctttcttctggatgaaagtcttaacaaaattctcgag
attaaacaaatcgaggcagagatgtcaaatactgcagagtgggagcagagaccagcgcaa
gagagacaggatagaacgagactcttccactctcaggagaatattgttagaattgacatg
aagctggctaatgaggatgtgactatgcttgcatttacatctgaggagatcacagcccca
tttctactccctgagatggttgagagggttgcgaatatgcttaattacttcttgttacaa
ctcgtgggtccacagcgtaagtctttaagcttgaaagatcctgagaagtacgagttccgt
ccaagacagttgcttaaacagattgttcgtatatatgtcaatctcgcaagaggagactca
gaaaacatatttcccagtgccatatccagtgatggacgatcatataacgaacagctattc
gacgcaggagcagatgttcttcggagaataggcgaagatggaagaatcattcaagagttt
atggagttgggcacaaaggccaaagctgctgcttctgaagctatggatgctgaagctgca
cttggtgaaataccggacgagttcctcgacccaattcagtgcacgctaatgagagatcca
gtgatactcccaagctcaaaaaccacagttgatcgagccatcattcaacgtcatcttctt
agcgacaatcacgacccgtttaaccgggcacatttgacatcggatatgttaataccggac
atcgatttgaaagcgagaatcgatgagtttgtgaggacgcatcagtctaagaaacgatca
agtggagaagatagcagcaacaaggagaggatacagactacgagcagtgatatgttaatc
gattaa
DBGET
integrated database retrieval system
