Brassica rapa (field mustard): 103846505
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Entry
103846505 CDS
T03449
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103846505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103846505
03036 Chromosome and associated proteins [BR:
brp03036
]
103846505
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103846505
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103846505
PBAF complex
103846505
GBAF(ncBAF) complex
103846505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
103846505
NCBI-ProteinID:
XP_009121690
UniProt:
A0A3P6DKP9
LinkDB
All DBs
Position
A10:16869997..16872346
Genome browser
AA seq
538 aa
AA seq
DB search
MSANNNNPQKPQQGSAPSPFGGNPGMASASVPGNQGFTQPHMAPNFPAQFQFSQAQAMAH
AQAQAQSKAQAQFQAQMQAGMTMNQGQGSQGIGGVLGSSSPSMTPGSLNMKRFQQRPPMR
PPSGFPASNNTVSPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALYTQLLEFESRV
DAALSRKKVDIQEALKNPPCTQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIVGRIL
EDGVDPDQPGFVQQANPSHPKFSSFFKKVIVNLDQRLYPENSAITWESARSPAPQEGFEI
KRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIISAIWHYVKARKLQNPN
DPSFFNCDAALHKVFGEEKVKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAISACYDV
LVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFI
NALIESQSKDLKVVAGEASRNAEKERRADFFNQPWVEDAVIRYLNRKPAAGNEGPGTW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaacaacaacaatccacagaagcctcaacaaggctctgcgccttcacccttc
ggcggtaaccctgggatggcctctgcatctgttcccggaaaccaaggcttcactcagcct
cacatggcacctaactttccagctcagtttcaattctcacaagcccaggccatggcccat
gctcaagcccaagcccagtctaaagcccaagctcagttccaagctcagatgcaagcaggg
atgactatgaaccaagggcaaggctcccaggggattggtggtgtgttgggttcgtcttct
ccttccatgactcctggtagcttgaacatgaagaggttccagcagaggccgccgatgcgg
cctccttctggtttccccgcgagtaacaacactgtctcccccatgagaacgatggagttg
actcctgctgcgaggaagaagaagatgaagcttcctgagaagtcgttgcaggagagggtg
gcagcaatcttgcctgagtctgcgttgtacacgcagcttcttgagtttgagtcaagggtc
gatgctgctttgagtaggaagaaagttgacatccaggaggctcttaagaaccctccttgc
actcagaagacgcttaggatctatgtgttcaactcgtttgctaaccaaaacaataccatc
cctgggaatccaaacgctgacccgccgacatggactcttaagattgttggtaggatcttg
gaagatggggtggatccggaccagccaggttttgttcagcaagcaaacccgtcgcatccc
aagttctcgtctttcttcaagaaggtaatagttaacctggaccagaggctgtatcctgag
aactcggcgatcacatgggagagcgctagatcacctgctcctcaggaagggtttgagata
aagaggaaagggaatcaggagtttgcagctactattaggttggagatgaactacgttcct
gagaagttcaagctttctactgcgttgatggatgttctcgggattgaggttgagaccaga
ccaagaataatctctgcgatatggcattacgttaaggcgaggaaactgcagaacccaaac
gacccttctttcttcaactgcgacgctgcgcttcacaaagtgtttggggaagagaaggtg
aagttcacaatggtctctcagaagatatctcatcacttgtcacctccaccgccgattcat
ttagaacacaagatcaagctgtcgggaaacaacccggctatatcggcatgttacgatgtc
ctggtggatgtgccgtttccgattcagagggatctgaacaacttgttggccaacgcagag
aagaataaagagattgaggcttgtgatgaagcgatatgtgcagccattaggaaaatccat
gagcataggaggagacgtgcatttttcttgggatttagtcagtcgccggttgagttcata
aacgcactgatcgaatctcagagcaaggatctgaaggttgtagcgggtgaagccagtcga
aatgctgagaaagaacgtcgagcagacttcttcaatcaaccttgggttgaggatgcggta
atacgttacttgaaccggaagccagcagctgggaacgaaggaccaggaacctggtga
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