Brassica rapa (field mustard): 103846516
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Entry
103846516 CDS
T03449
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103846516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103846516
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
103846516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
103846516
NCBI-ProteinID:
XP_009121703
UniProt:
M4CX36
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Position
A10:complement(16895229..16897186)
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AA seq
525 aa
AA seq
DB search
MSTLSQNAPTSKARREETEDDVRAKRRKMEEEKQRESEQVEMKKLENLLFGSLYNPVSFG
EREADVEGSDLFRVDRSAVRQTPDSEDDDEQDSDDDERVQSEGVRKGEAAWEDEEEKEIN
INIASVNRLRKLRKEEDEGLISGSEYIARLRAHHAKLNPGTDWARTDSQITDGDSSDDGG
DNDDDDILRTNEDLVVKSGGSKLCSGLLEYSKQADANIADHSDAPINSVQFHQNAQLLLT
AGNDRRLRFFQIDGTRNTKIQSIFLEDCPIHKAAFLPNGSQVIVSGRRKYFYSFDLENAK
FDKIGPLVGREEKSLESFEVSQDSKTVAFMGNGGYILLVSTKTKELTGTLKMNGSVRSLA
FSDDGKQLLSSGGDGQVYVWDLRTMKCLYKGVDEGSTCGTSLCSSPNGALFASGTDRGIV
NIYKKAEFLGGKRKPIKTVDNLTSEIDFLKFNHDGQILAIISRMNKDSVKLVHVPSLTVF
SNWPPPKKKMGFPRCLDFSPGSGFMAMGNAVGKVLLYKLNHYMNA
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgttatctcagaacgctccgacgagcaaggctagaagagaagagaccgaagat
gacgtaagggccaagagaaggaagatggaggaagagaagcaaagagagtctgagcaggtt
gaaatgaagaagcttgagaatctgttgtttggatcactctacaaccctgtttcatttggt
gagagagaagcagatgtggaaggatctgatttgtttcgtgtagatcgttctgctgtaagg
caaactccagattctgaagatgatgatgaacaagactctgatgatgatgagagagttcaa
tctgagggagttaggaagggagaagctgcttgggaggatgaagaagagaaagagattaat
attaacatagctagtgttaaccgtctgaggaagctgaggaaagaggaggatgagggttta
atctctggttctgagtacattgctaggctgagagctcatcacgctaagcttaaccctgga
acagattgggctaggactgattctcaaatcactgatggagattcctcagatgatggtggt
gataatgatgatgatgatatactcagaacaaacgaagatcttgtggtgaagtccggtggc
tccaagctgtgttctggtcttcttgagtattcaaaacaagcggatgccaacatagcagat
cattcagacgctccgattaactccgtccagttccatcaaaacgctcagctgcttctcacg
gccggaaacgatagaaggctgaggtttttccagatcgatgggacgaggaacacaaagata
cagagcatctttctcgaggactgtcccattcacaaagcggccttcttgcccaacggctct
caggtgattgtctcggggaggaggaagtacttttacagctttgatttggagaatgcgaag
tttgacaagattggtccattggttggaagagaggagaagagcttggagagtttcgaagtg
tcgcaagactccaagaccgtagccttcatgggaaacggaggctacatcttgcttgtgtcc
acaaagaccaaagagctgacgggaactttaaaaatgaacggctcagtgaggtctttggcg
tttagtgatgatgggaagcagctgctgagctcgggaggggacgggcaagtctacgtatgg
gatctgagaacgatgaagtgtttatacaaaggtgtggacgaagggagcacgtgtgggact
tcgctttgcagctcgccgaacggagctttgtttgcctctgggacggatagagggatcgtg
aacatttacaagaaggcagagttcttgggaggcaagaggaagccgataaagacggtggac
aatctcacttcagagattgattttttgaagtttaaccatgatggtcagattctagctata
atctcgaggatgaataaagacagtgtgaagcttgtccatgttccgtctctaaccgtcttc
tcaaactggccaccgccaaagaagaagatggggttccctcgctgcttggacttcagccct
ggaagtggcttcatggctatgggaaacgctgtaggaaaagttttgctttacaaactgaat
cattacatgaatgcttga
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