Brassica rapa (field mustard): 103846746
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Entry
103846746 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103846746
09122 Translation
03013 Nucleocytoplasmic transport
103846746
03015 mRNA surveillance pathway
103846746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103846746
03041 Spliceosome [BR:
brp03041
]
103846746
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103846746
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103846746
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103846746
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103846746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
103846746
NCBI-ProteinID:
XP_009121982
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All DBs
Position
A10:17795551..17798915
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AA seq
408 aa
AA seq
DB search
MGDVRESEAYEEELLDYEEEDEKLLDSATKTNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTRVSVFYGGVNNKIHKDLLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAGELNKLLIECNFPSICIH
SGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRA
GRFGTKGLAITFVASASDSEVLNQVQARFEVDIKELPEQIDTSTYMPS
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgttagagagagcgaagcctacgaggaggagcttctggactacgaggaagag
gacgagaaacttctagattctgctactaaaactaacggcgatgccgtgaagaaaggttat
gttggcatacacagttctggattcagagacttccttttgaagccggagcttctccgagct
attgttgactctggatttgagcatccatccgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgccgtcttt
gtgctttcgactctgcaacagatcgagccatctcctggccaggtgtccgccctaatcttg
tgccatacaagggaattagcttaccagatctgcaatgagtttgtgcgattcagtacctat
ctgcctgatacgagggtttcagtgttctatggaggagtcaacaataaaattcacaaagac
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgggtccttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgaatgtgat
aaaatgctcgagtctctcgacatgaggagggatgtgcaggagattttcaagatgacacct
cacgataaacaagtcatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatcactacatcaaactgagcgagatggagaagaaccgcaagttg
aatgatcttcttgacgcattggacttcaatcaagttgtcatatttgtgaagagcgttagc
agagctggggagctgaacaagttgcttattgaatgcaatttcccctcaatatgcattcac
tctggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaaggacacaag
agaattctagtggcgacagacttggtagggagaggcattgacattgagcgtgttaacatt
gttatcaactacgacatgccagattctgctgatacatatcttcatagggtcgggagagct
ggaaggtttggaacaaagggtcttgcgatcacgtttgtggcatcagcttcagactcggaa
gttcttaatcaggtgcaagccaggtttgaggttgatataaaggaacttcctgaacagatt
gatacttccacatacatgccctcttaa
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