Brassica rapa (field mustard): 103846897
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Entry
103846897 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103846897
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103846897
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103846897
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Motif
Other DBs
NCBI-GeneID:
103846897
NCBI-ProteinID:
XP_009122152
UniProt:
M4CY17
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Position
A10:18364189..18368607
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AA seq
595 aa
AA seq
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MDPSPNTNEALTETRFSDLKPPLSEDIIEALLRSGPPGFEFCTPVQAATIPLLCSHKDVA
VDAATGSGKTLAFVLPLVEILRRSTSYPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTL
PNVNSVLLVGGRDVRADMKIIEEEGCNLLIGTPGRLSDIMERMDILDFRNLEILILDEAD
RLLEMGFQKQVNSIISRLPKQRRTGLFSATQTEGVEEMAKAGLRNPVRVEVRAESKSASL
TNSKIPFGLHLEYLVCEADKKSSQLVDLLVRNKNKKLIVYFMTCACVDYWGLVLSKIPAL
KSISLIPIHGDKKQNARDKALASFTKASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPK
MFNHRVGRTARLGKEGRSIVFLLPEEEDYVEFMRRRGVFCQEKKCSEEASDVIPIIRSLA
MKDRAVYEKGKRAFVSFVHGYKEHECSYILRWQSLEIGKLAMGYGLLHVPSMSEVKQKRL
SSEGFSPVEGVLKFEDIKFKDKSKEKQRKQNLQAKKEKLEDKKRERDKKNSKKAVNASSA
TADSKKRKLTGKQRQTIQTAEDEEEMARDYRLLKKLKKGSIEEDDFAKLTGADDF
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggatccatcgccgaacactaacgaagcgttgacggagacgcgtttctccgacctaaaa
cctccactatccgaagatatcatcgaggcgcttctccggtccggaccccccggtttcgag
ttctgtactccggttcaggccgcgacgatccctttactctgcagccataaggatgtcgcc
gtcgacgccgccaccggttctggaaaaaccctggctttcgtcctccctttagtagagatt
ctccgtcgttccacttcttacccgccgaaacctcaccaggttatgggggtgattatatcg
ccaacgagagagctatcaacgcagatatataacgtggcgcagccctttgtttcgactcta
ccaaatgtgaactctgtgctgcttgttggaggccgagatgtgagagctgacatgaagatt
atagaagaagaaggatgcaatctcttaatcggcacgcctgggaggctctctgatataatg
gaacgaatggatattcttgatttcagaaatcttgagatacttatcttagatgaggcagat
aggcttttggagatgggattccagaagcaggtgaacagcattatatctcgcttgccaaag
caacgtaggactggcctcttttcagctacacagacagaaggcgtcgaggagatggccaag
gctgggcttaggaaccctgtgagagtcgaagttcgagctgagtcaaagtcggcatcattg
acgaactcgaaaataccttttggtctgcaccttgagtatttggtatgcgaggcagataag
aaatcatcacaactagtggatctcctcgtccggaataaaaacaaaaagcttatagtctac
ttcatgacttgtgcttgtgttgattactggggactcgttctttcaaaaatccctgccctg
aagtccatttctttaattcctatccatggggataagaagcagaatgcaagagacaaggcg
ttggcttcgtttactaaagcatcaagcggtgtccttttgtgcactgatgtcgctgcacgt
ggacttgacattccaggcattgattacgtagttcagtatgatccaccacaagacccaaag
atgttcaaccatagggttggcagaactgcaagattgggaaaagaaggaaggtccattgtt
tttctactgcctgaggaagaagactatgtagagtttatgcggagaagaggagtcttttgt
caagagaaaaaatgttctgaggaagcatccgatgtcatcccgattatacgttcactagcc
atgaaggaccgggcagtgtatgagaagggaaaaagggcatttgtttcctttgtccatggt
tataaggagcatgaatgctcttacattttaagatggcaaagccttgaaatcggaaagtta
gccatgggatatggactcttacatgttccatcaatgtctgaagtgaaacaaaaaagactg
tccagtgagggtttctcacccgttgaaggcgtcctcaagtttgaagatataaaattcaag
gacaagtctaaggagaagcaaagaaagcaaaacttacaagcaaagaaagagaagctggaa
gataagaaaagagagagagacaagaaaaactcgaaaaaggcggttaatgcttcttctgct
acggcagattctaagaaaagaaagctaacaggaaagcaaagacaaaccatccaaacagct
gaagatgaagaagagatggctcgagattaccggttactgaagaaactgaagaaaggttca
attgaagaagatgattttgctaaacttacaggagctgatgacttttaa
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