Brassica rapa (field mustard): 103847197
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Entry
103847197 CDS
T03449
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103847197
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103847197
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
103847197
NCBI-ProteinID:
XP_009122504
UniProt:
M4CYS8
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Position
A10:complement(19481877..19483421)
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AA seq
378 aa
AA seq
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MVRFLTIALIPILTILFVANVLVATELNVMDKCWRPNPHWRKVRNQLARCSVGFAGKMTG
NIGKGVTQYKVTDPSDDPLNPKPGTLRYAATLIKGKKWITFKRNMKINLHKPLLISSFTT
LDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIMELGQVDGDAI
RLVTAKKVWIDHNTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDKDM
RVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVAPES
GRKEITWKKHSQGDKMQWKFYSVNDYMENGACFGLQKGIGKARPNYGPSQRFIVADAKTV
KELTSSAGALHCTRNSVC
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggttaggttcttgaccattgcgctgattccaatcttgaccattttgttcgtggcaaat
gtcttggtagccacggaactgaatgtaatggacaaatgttggagaccaaacccacattgg
cgtaaagtccgtaatcagctggcacggtgttcggtcggattcgctggaaaaatgacggga
aacatcggtaagggagtaacacaatacaaagtaaccgacccttctgatgatcctctaaac
cccaaaccaggaaccctaagatatgcagcaactctcatcaaaggcaaaaaatggatcacg
ttcaaaagaaacatgaagatcaacctccacaaaccgctgctaatcagcagcttcaccaca
ctcgatggtcgcggtgtcagcgttcacatctccggtcctgcatgtctcatagtctacaaa
gccaccgatgtgatcatccatggactcaaaatccacgactgtaaagctcacccaccgagc
tcggtgatgggaccagactcaaagatcatggaacttggacaagtggacggagatgcaatc
aggctagtcacggctaagaaagtgtggatcgaccacaacacgttatatgactgcgaagac
gggctattagacgtcacgagagggagtactgacgtcacagtgtcgaacaattggtttagg
aatcaggacaaggtcatgcttcttggacatgatgatgggtatgtgagagacaaagacatg
agagtcactgttgtgtttaaccactttggtcctaactgcaaccagagaatgccacgagtg
agacatggatatgctcatgtggcgaataactattaccaaggatggacacaatacgctatt
ggaggaagcatgagccctcgcgtgaagagcgaatcaaactacttcgtcgcaccagaatcc
ggacgcaaagagataacttggaagaaacatagtcaaggtgataaaatgcaatggaagttc
tactcggtgaatgattatatggagaacggagcttgtttcggcttacagaaaggtattgga
aaagcccggcccaattacggcccatctcaaaggttcatagtagcggacgctaagacagtt
aaagaactcacttcttcagctggagcgctacactgcaccagaaactctgtctgttag
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