Brassica rapa (field mustard): 103847246
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Entry
103847246 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103847246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103847246
03012 Translation factors [BR:
brp03012
]
103847246
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103847246
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103847246
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103847246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
103847246
NCBI-ProteinID:
XP_009122554
UniProt:
A0A397XYH8
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All DBs
Position
A10:complement(19622150..19627433)
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AA seq
1156 aa
AA seq
DB search
MRFTKRISFFLWQATKLPTRSLPRNPSLCRSYHIVGAPISSGDVVKGLSYGQIRRRFIGY
TAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKRDRRDYEQIS
NLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDR
QQLNSGKANESEADSQPPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRNMQRAWQESP
EGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGA
FCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLFCTSGILLRR
LLSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYF
GGAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQLMPRKRKNQ
ITSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERPGAVLVFLTG
WDDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEA
SITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPGECYHLYP
KCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAGFLSAALQAPEPLTVQNAIGFLKM
IGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQE
KKDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQTLQAIHSLR
KQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDG
QVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALSTGVQVGH
LKMLDGYIDFFMDPNLADSYVKLKEELNKLLQKKLEDPSVDIHKEGKYLMLAVQELVAGD
QCEGRFVFGRDTKRPSQPQLAGENNKLSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDADSPPDVTDN
MLKLLGGKRRRRSKGK
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcaccaaacgaataagcttcttcctgtggcaggccaccaagctccccactcgc
tctctaccgagaaacccatctttatgcaggtcttatcatatcgttggtgctccgatctct
agtggtgatgttgtcaaaggtttgtcatacggccagatacgtcgtcgtttcatcgggtac
actgcggaacagttctctgatgatgagtacgagtgtgaattcgaggaacataaggcttca
tcttctgtggccaatgttgatgagtggaaatggaagttagggattctgttggctaatgat
agcgaacgagagattgtttctagagacaaaagagaccgaagggattatgagcagatctca
aatcttgccaagagaatgggactctacagtgagatctatggaaaagtggttgttgcaagc
aaggttcctcttcccaactacaggccagatttggatgataagcgaccacaacgggaggtg
gtacttcctttgagtttgcagagaagggtagagggactactccaggaacaccttgataga
cagcagctgaactcaggaaaggctaatgaaagtgaagctgattctcagcctcctaagcag
actgaagagcttcctgatgaaagctctgatgcgtttctcgatggttctgttatggagaag
gtgcttcagaggaggagtatgcggatgcgcaatatgcagagagcctggcaggaatcacct
gaggggcgtacaatgctggaattccggaaatctttgccttcattcaaggacaaggaaaga
cttcttcaagctattgctcggaaccaggtaatagtggtatctggggagactgggtgtggt
aagacaactcaactgccacagtacattttggaatcggagatagagtctggtcgaggagcg
ttctgcaacatcatttgtacacaacctcggaggatatctgccatggcagttgcagaaaga
gtgtctgctgagagaggagaacctcttggtgaaacggttgggtttaaagttcgtctagaa
ggaatgagaggaaagaatactcaacttctgttttgtacaagtggtattctactcagacgt
ctccttagtgatcgcaatttgaatggcataacacatgtttttgttgacgagattcacgaa
aggggaatgaacgaagatttcttgataatagtgttgaaggagcttcttccacggcgtccg
gatctgagattggttctcatgagtgccactttgaatgctgaactcttttctaactatttt
ggaggagcgcctacaattcacattccaggcttcacacatccagtgaaggcacattttctg
gaggatgtactcgaaatgacgggatataagttgacctctttcaaccaagttgatgattat
ggccaagaaaagacttggaaaacgcaaaagcagttgatgccacgcaaaaggaaaaaccag
atcacttctcttgttgaggaagctcttagcaagtcaacttttgaaagttatagctctagg
actcgtgattcactctcgtcttggatgcctgattgcgtaggatttaatcttattgaggcc
gttctctgtcacatatgccgcaaagaacgcccgggagctgtactagtgtttttgacagga
tgggatgatattagctccctgagggaccaaatcaaagcacatcctctcctcggtgatccc
aatagagtcttgctgttgatgtgccacggttcaatggcaactgctgaacagagactcatt
ttcgagagagcacctcctaatattcgcaaaattgtacttgctacaaacatggcagaagct
agtattacaataaacgatgtagtttttgtggttgactgtggaaaggcaaaagagaccacc
tatgatgctttgaacaatacgccttgtttgctaccctcatggatatctcaagcttctgct
agacagagaaggggcagagctggtcgtctgcttccgggagaatgctatcacctgtacccc
aaatgcgtgtatgaagctttttcggagtatcaacttcctgaacttctgagaactcctttg
aactctctctgcctgcaaattaaaagtcttcaggttgaaagcattgccgggttcttgtca
gctgcacttcaggctccggagcctttgaccgttcaaaatgctattggattcctgaaaatg
attggagcactggatgagaaagaaaatctgacggatcttggaaaactcttatcgattctt
ccagttgatcccaagctggggaaaatgctcataatgggtgccatcttccactgctttgat
cctatcctgacaattgtatcagggctcagtgtcagagatcctttccttctacctcaagag
aaaaaggacttagctttatcagccaagttgagattctcagctaaagactacagtgaccat
atggcactagttcgtgccttcgaagggtggaaaaatgctgaaagagaaggatcggcttat
gagtactgttggaggaactttctgtcagctcagacgcttcaggcgatacattctctgagg
aagcagttcaactatatcctgaaagaagctggcttagtacacgatgattcagctctcaac
aacaagctgagtcacaatcagtctcttgttcgcgctgtcatttgctctggcttattcccc
gggatagcatctgttgtgcatagagagacttccatgtcgttcaagacaatggatgatggc
caagtatcactatatgcgaactctgttaattcgaggttcccgacgattccatacccttgg
ctagtctttggagagaaagtgaaggtcaatgcagtgctcataagagactccaccggtgtc
cctgattccagtttgatcctttttggtggtgcactgagcaccggagtacaggtgggacat
ctaaaaatgcttgacgggtacattgacttcttcatggatccaaatttggcagactcctac
gtgaagctgaaggaagaactcaacaagcttcttcagaagaagcttgaagatccaagcgtg
gacatccacaaagaaggcaagtacctgatgcttgcagttcaagaactcgtcgctggagac
caatgcgaagggagattcgtattcggccgcgacacaaagaggccaagccaaccgcaatta
gcaggagagaacaacaaactctccaaagacgggacaaacccgaagagtctccttcagacg
cttttaatgagagctggacactcgcctccaaagtacaagaccaaacatctgaagacgaac
gagtttagagcgcttgtggagttcaaagggatgcagttcgttgggaagcctcagaggaac
aaaacgctcgctgagaaagatgcagctgttgaggccttggcttggttgactcatacatct
gataatagtactgaccagtacagtggagacgcggattctccacctgatgttactgataac
atgcttaaactccttggtggaaaacggcgcaggcggtccaaaggcaagtag
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integrated database retrieval system
