Brassica rapa (field mustard): 103847873
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Entry
103847873 CDS
T03449
Name
(RefSeq) cell division control protein 48 homolog A
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103847873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103847873
03009 Ribosome biogenesis [BR:
brp03009
]
103847873
04131 Membrane trafficking [BR:
brp04131
]
103847873
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
brp04147
]
103847873
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
103847873
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
103847873
Membrane trafficking [BR:
brp04131
]
SNARE
SNARE associated proteins
Others
103847873
Autophagy
Aggrephagy
Other aggrephagy associated proteins
103847873
Exosome [BR:
brp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
103847873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
Vps4_C
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NB-ARC
TsaE
NACHT
DUF815
AAA_24
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
103847873
NCBI-ProteinID:
XP_009123155
UniProt:
M4EZ46
LinkDB
All DBs
Position
A01:complement(27302359..27305687)
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AA seq
810 aa
AA seq
DB search
MSNPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTICIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGQRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWD
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGGGGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKACLRKSPVAKDVDINALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSEN
PEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFET
NAAGSGATTGVADPFATSAAAAADDDDLYN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacccagctgaatcttcagactcgaaatcgaagaaagacttcagtactgctatt
ctggagaggaagaagtctccgaacagactcgtcgtcgatgaggccatcaacgatgataac
tccgtcgtgtctctccaccctgccaccatggagaagctccagctcttccgtggcgatacc
attctcatcaagggtaagaaaaggaaggatactatttgcattgctcttgctgatgagtca
tgtgaggagccaaagataaggatgaacaaagtggttagatctaacttgagggttaggctt
ggtgatgtcatctctgttcaccagtgccctgatgtcaagtacggacagcgtgtgcacatc
ttgcctgttgatgataccgttgaaggagtcactggaaacctctttgatgcttacctcaaa
ccttatttcttggaggcgtatcgcccagtgaggaagggagatctcttcctagtgagagga
ggaatgaggagtgtggagttcaaggttattgagacggatcctgctgagtactgtgtggtg
gctccggacactgagattttctgtgagggtgagccagttaagagagaggatgaagaaagg
ctagatgaagtgggttatgatgatgttggtggtgtcaggaagcagatggctcagatcagg
gagcttgttgagcttcccttgaggcacccacagctgttcaagtcgattggtgttaagcca
ccgaaggggattctgctttacggaccacctgggtctggcaagactttgattgctcgtgcc
gtggctaatgaaactggtgcctttttcttctgtatcaatggtcctgagatcatgtctaag
ctggctggtgagagtgagagcaatctcaggaaagcgtttgaggaggctgagaagaacgct
ccttcgattatatttatcgatgagattgactctattgcacctaaaagagagaagactaat
ggagaggttgagaggaggattgtgtctcagctccttacgcttatggatggacttaagtct
cgtgctcacgttattgtcatgggagcaaccaatcgtcccaacagtattgatccagctttg
agaaggtttggaagatttgatagggagattgatattggtgttcctgatgagattggacgt
cttgaagttctcaggatccacactaagaacatgaagcttgctgaagatgtggatcttgag
aggatctcaaaggacacacacggctatgttggtgctgatcttgcagctctgtgcacagaa
gctgccctgcagtgcatcagggagaagatggatgtgattgatttggaagatgactccata
gatgctgaaatcctcaactccatggcagtgaccaatgagcacttccacactgctctcggc
aacagcaacccatctgctcttcgtgaaactgttgtggaggttcctaatgtttcttgggat
gacattggaggtcttgagaatgtcaagagagagctccaggagactgtccaatacccagtg
gagcacccagagaagtttgagaagttcggtatgtctccatcaaagggagtcctcttctac
ggtcctcctggatgtggtaaaacgctattagccaaagctatagccaacgagtgccaagca
aacttcatcagtgtcaaaggtcctgagcttctcaccatgtggtttggtgagagtgaagcc
aacgtccgtgaaatctttgacaaggcacgtcagtctgctccctgtgtgctcttctttgac
gagctagactccattgccactcagagaggaggtggaggcggaggtgatgcaggcggcgca
gcggacagagtcctcaaccagcttttgaccgagatggatggaatgaacgccaagaagact
gtcttcatcatcggagcaaccaacagacccgacattattgattctgctcttctccgtcca
ggaaggctcgaccagctcatttacattccgctcccagacgaggattcacgtctcaacatc
ttcaaggcctgcttgaggaaatcacctgttgctaaagatgttgacatcaacgctctggct
aagtacacgcaggggttcagtggtgctgatatcactgagatttgccagagggcttgcaag
tacgccatcagagaaaacatcgagaaggacattgaaaaggagaagaggaggagcgagaac
cctgaggcgatggaggaagatggagtggatgaagtgtctgagatcaaagctgcacacttt
gaggagtcgatgaagtatgcgcgcaggagtgtgagtgatgcagacatcaggaagtaccaa
gcgtttgctcagacgctgcagcagtctagagggtttggttctgagttcaggttcgagact
aatgctgctggttcaggtgcaaccactggagtcgccgatccttttgccacctcggcagct
gctgctgcggacgatgatgatctctacaattag
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