Brassica rapa (field mustard): 103848917
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Entry
103848917 CDS
T03449
Name
(RefSeq) LOW QUALITY PROTEIN: peroxisome biogenesis protein 12
KO
K13345
peroxin-12
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
103848917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103848917
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Peripheral membrane proteins
103848917
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pex2_Pex12
zf-C3HC4_3
zf-C3HC4_2
PRIMA1
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103848917
NCBI-ProteinID:
XP_009123989
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Position
A05:28423280..28426577
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AA seq
412 aa
AA seq
DB search
MLFQVGGDGTRPTFFEMAAAQQLPSSLRAALTYSLGVFALRRSFLHRILDYEDEFFAALM
LILEGHSLRTTDASFAESLYGLKRKSVRLRLRLCKGSGLEKRQRILSVVFLVVLPYFKSK
LHGIYNKEREARLRESLWGAEDQGFDEADFFTGEEPVVSRGDSGDQELSVXKFVAVCYPL
MHASSEGLSFTYQLLYLLDATGFYSLGLQALGVQVCRATGQELMDTSSRISKIRNHERER
LRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEWWYQSAEERLTAPTVYPPPP
PPPSPKVAKEGIPLPPDRTLCALCSQKRANLSVVTVSGFVFCYSCVFKYVSQYKRCPVTL
IPASVDQIRRLFHDTQKKNFLMGLKPNSERFCSQSLVWRWRNQSLQTLHWKS
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttcaggtgggaggtgatggcacgcgccctaccttcttcgagatggctgcagct
cagcagcttccatctagcctccgcgccgctctcacatactccctcggcgtttttgcattg
agaagatcgtttcttcacagaatcttagactacgaggatgagttctttgctgctctgatg
cttatcctcgaaggacatagcttacgaaccacagatgcttcgtttgctgaatcattgtat
ggtttaaagaggaagtcagtgagattgagattgagattatgcaaaggttctggtttagag
aaacgccagaggatcctctctgttgtgtttctggttgtgttaccgtattttaagtcgaag
ttgcatggtatatataacaaggagagggaagctaggctccgggagagtttatggggagca
gaggatcaagggtttgatgaagctgactttttcacaggggaggagccagttgtttcaaga
ggggatagtggggatcaggagctttctgttncgaagtttgtagctgtgtgctatcctctg
atgcatgcatcaagtgaaggattatcattcacttaccagctcttatatctactagacgct
actggattttattcccttggccttcaagctcttggagttcaagtttgtcgagctacagga
caagaactgatggatacatcttcaagaatttcaaagataagaaaccatgagcgtgagaga
cttcgtggtcctccatggctaaaaacagtgcaaggggcacttctcagctgttcatatgca
gtgcttgattacgcccaaaccggtttaattgcagcagtttttatctttaaaatgatggag
tggtggtatcaatcagctgaagagagattgacagctcctaccgtgtaccctccaccacca
cctcctccatccccaaaggtggctaaagaaggaatccctctacctcctgacaggactctc
tgcgcgttatgctcgcaaaaacgtgcaaacttgtcagttgtaacagtctctggatttgtt
ttctgctattcttgtgtattcaagtatgtttcacagtacaagcgatgtccagtgacattg
attccagcaagcgtggatcagattaggaggttgtttcatgacacacagaaaaaaaatttt
ttaatgggtttgaagccaaacagtgagcgcttctgttctcaatcgttggtttggagatgg
cgcaaccagagtctacagactctacactggaagagctaa
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