Brassica rapa (field mustard): 103849039
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Entry
103849039 CDS
T03449
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Module
brp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103849039
Enzymes [BR:
brp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
103849039
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103849039
NCBI-ProteinID:
XP_009124109
UniProt:
M4FG08
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Position
A01:27717998..27720502
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AA seq
396 aa
AA seq
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MGAYFGVSTIFILCLLGFSANAEVFSIGSSSGSDITQALLKAFTSACQSPSPSKVVIPKG
EFKLGEIEMRGPCKAPVEITLQGTVKADGNAIQGKEKWVVFGNINGFKLNGGGAFDGEGN
AAWRVNNCHKTFNCKKLPISIRFDFVENAEIKDISSIDAKNFHINVLGAKNMTMSNIKIT
APEDSPNTDGIHLGRSDGVKILDSFISTGDDCISVGDGTSNLHVEKVTCGPGHGISVGSL
GRYGKEQDVSGIRVVNCTLQETDNGLRIKTWPSAACSTTASDIHFEDIIVKNVTNPILID
QEYCPWNQCNKKKASTIKLVNISFKNVRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYS
GEDGPATFQCSNVSPKLLGAQSPEACSSPLTKLPGQ
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcatattttggagtttctacaatatttattttatgtttgctgggattttcagcc
aatgctgaggtattcagcattggttcctcttcaggttctgatattactcaggcacttctg
aaagcattcacatcggcatgccaatctccgtcaccgagcaaagtggtgattccaaaagga
gagttcaagcttggtgagatcgagatgaggggtccatgcaaagctccagtcgagatcacc
cttcaaggcactgtcaaagctgacggtaacgcgatccaggggaaggaaaaatgggttgtc
ttcggcaacattaatggatttaagttgaacggaggtggagctttcgacggtgaaggtaac
gcggcttggagagtcaataactgtcacaagacattcaactgcaagaaacttcccatcagt
ataaggtttgatttcgtggagaacgctgagatcaaagacatatcatccatagatgccaag
aacttccacatcaacgtgctgggagccaagaacatgaccatgagtaacatcaagatcacc
gctccagaagacagtcccaacactgacggcatccatttgggaagaagtgacggagtcaag
atccttgactcattcatctccaccggagacgactgcatctccgttggagatgggacgagt
aaccttcacgtggagaaagtcacgtgcggtccaggacatggaatcagtgtcggaagcctt
ggaaggtacggcaaagagcaagatgttagcggcattagggtcgtgaactgcactctccaa
gagactgacaacggactgaggatcaagacatggccttctgcagcttgctccaccactgcc
tctgatattcatttcgaggatatcattgtcaagaacgttaccaacccaatcctcatcgac
caagagtactgcccttggaaccaatgcaacaagaagaaagcatcaacgattaagcttgtg
aatataagcttcaagaatgtcagaggaacatcaggaaacaaagatgcagtgaagctactg
tgcagcaagggatatccatgccagaacgtcgagattggagacattgacattaagtacagc
ggagaggatggtccagcgactttccagtgctcaaacgtaagtcccaaactcttgggagct
cagagccctgaagcttgcagcagtcccctgaccaaactacccggccaataa
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