Brassica rapa (field mustard): 103849216
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Entry
103849216 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103849216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103849216
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103849216
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_12
TPR_2
TPR_14
TPR_8
ARM_TT21_N
TPR_10
HEAT_Nup120
TPR_19
SRP_TPR_like
TPR_3
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
103849216
NCBI-ProteinID:
XP_009124279
UniProt:
M4F2V4
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All DBs
Position
A04:7143526..7147787
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AA seq
777 aa
AA seq
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MDSIPSDAARDGSICDEAIVLSVTCALAKDALSYFQSGKFHECIDILIQLNHKKRNDPKV
LHNMAIAEYFKNACSNSKKLLEDLNTVKKQSEELAKEPLEAVNPGSNVSVSKDLFDSTVT
TLNIAVTWFHLHQYAKCLSILDPLFLNIEPLDETIALQICFLMLDSALACHDAVKFLEVF
GHLDKSFGVGFGTHEEIGSTMQLSSNQVSKTSSLLSSSAASDALKSDLAAAESGLCEEGL
EYDNVLAEIEAEKRMKPVGHIPANNLLKTIGERSILTVDVKLELQLYKVRFLLLTRNVKL
AKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHRKAIKLLLVSGIQKELRTSGIFNNNL
GCIYYQLGKYQAASVLFLNALRNCSSLRKDNPVKLFSLSQDKSLLITYNCGVLYLACGKP
LLAAQCFQKASLVFCRQPLLWLRIAECCILALQKGLLEGGNTSSDRSEIRVHVIGKGKWR
QLMMEENGFVELGGSAQWPKLSLPLARVCLSNSMYLLNVSLMNESKSDLESPLSVMINDT
KEASWSDHGDANTNSELKEAKGGMNQDIIQNSLSAYKDIRRRENHLLKQALLANMAYVEL
ELENPIKALSAANSLLQLPDSSKIYVFLGHIYAAEALCLLNRPGEAGAHLSAYLLGQEDF
KLPFAQEDFDPWRMNMSSDCEETSDCSTGNARDSLKPEEARGALFANLAALFATQGHYDQ
AKPFIQHALTVLPNNVQATITAVYIDLMVGRSQDAVARLKQCTRVSFVPGRLEVRAS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggattcgataccatcggacgccgctagagatgggtcaatctgcgacgaagccatcgtt
ctatctgtaacttgtgcactcgctaaagacgctctctcctatttccaatctggcaaattc
cacgagtgtatcgacattctgattcagctcaaccacaagaaacggaacgatcccaaggtt
cttcacaatatggcaattgcagagtacttcaaaaatgcttgctcgaattccaagaaacta
ctcgaagatcttaacactgtcaagaaacagagtgaagaacttgcaaaagaaccactggaa
gctgtaaaccctggatctaacgtctctgtgtcaaaggatctgtttgatagtactgtcaca
actctcaacattgcagttacctggtttcatctgcatcagtatgctaaatgtttatccatt
ctagatcctctgtttctaaatattgagccgctagacgagactattgcacttcaaatctgc
ttcttgatgctggatagtgcgctggcttgtcatgatgctgtgaaatttttggaggtgttt
ggccatctggacaaatcttttggtgttggttttggaactcatgaggaaattggaagcaca
atgcaactttcttcaaatcaggtgtcaaaaacatcttctctcctgagcagctcggcggcc
tcagatgctttgaagtctgatttagcagctgctgaaagtggtttgtgtgaggaaggtcta
gagtatgacaatgttctagcggaaattgaggccgagaaacgaatgaagccagttggccat
attccagcaaacaatcttctcaagacaataggagaaaggtccatcttgactgttgatgtg
aagcttgagttgcagctttacaaagtccggttcttacttcttacgagaaacgtaaaactg
gctaagcgtgaagttaaacatgcgatgaacattgctcaaaaaagggactcctctatggct
ctcctcttgaaatctcagcttgagtatgctcatgggaatcatcgaaaggctataaagctc
ttgttggtctccggtattcaaaaagaattgaggacttcaggaatcttcaacaacaacctt
ggttgcatatactatcagcttggaaagtatcaagccgcctctgtgttatttttgaatgct
ctaaggaattgttcatcactaagaaaggataatcccgtgaagttgttttctctctcacag
gataagtctctgttgatcacttacaactgcggtgtgctttatttagcttgtggaaagcct
ctacttgctgctcaatgcttccagaaggcaagcctagttttctgcagacagcctctcctc
tggctccgtatagctgaatgctgtatactggctttacaaaagggtcttttggaaggggga
aacacttcttcggatagatcggaaatcagagtccatgtgattgggaaagggaaatggaga
caacttatgatggaagagaatggattcgtggaacttggtggcagtgcccaatggccaaag
ctttcactgccactagcacgggtgtgtctctctaatagcatgtatttgctcaatgtgtct
ctcatgaatgaatctaaatcagatcttgagtcaccactatccgtgatgataaatgacacc
aaggaggcatcatggtctgaccatggcgatgctaataccaactcagaattgaaggaggca
aaaggaggaatgaaccaggacataattcaaaactccctctccgcttacaaggatatccgt
agaagagagaatcatttgctcaaacaagctcttcttgccaatatggcttacgttgaattg
gagttggagaatcctatcaaagccttgtcagctgctaattcactcctgcaacttccagat
tcttcaaagatatatgttttcttaggccatatttacgcagcggaggctctctgcttgctc
aacagacccggtgaagctggtgcgcatttatctgcctatctactcggacaggaagatttt
aaactgccatttgcgcaagaagactttgacccgtggcggatgaacatgagttccgactgt
gaggagacatcggattgttccacaggaaatgcccgggattcactcaagccagaagaagct
cgtggagcactttttgcaaaccttgccgccctctttgcaacacaagggcattatgaccag
gccaaacctttcattcaacacgctttaactgtcctaccgaacaatgtacaagctacgatt
acagcggtctacatcgatctcatggtgggtaggtcacaagatgccgttgctcggttaaaa
cagtgtacccgtgtgagctttgtccctggcagattggaagtgagagcctcgtaa
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