Brassica rapa (field mustard): 103850038
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Entry
103850038 CDS
T03449
Symbol
HD1
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03082
ATP-dependent chromatin remodeling
brp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103850038 (HD1)
03083 Polycomb repressive complex
103850038 (HD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103850038 (HD1)
Enzymes [BR:
brp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
103850038 (HD1)
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
103850038 (HD1)
HDAC complexes
Sin3A-HDAC complex
103850038 (HD1)
BRAF-HDAC complex
103850038 (HD1)
REST complex
103850038 (HD1)
SHIP complex
103850038 (HD1)
MiDAC complex
103850038 (HD1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
103850038 (HD1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
103850038 (HD1)
Chromatin remodeling factors
NuRD complex
103850038 (HD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
103850038
NCBI-ProteinID:
XP_009124989
UniProt:
A0A398AZL3
LinkDB
All DBs
Position
A01:complement(28635532..28639298)
Genome browser
AA seq
502 aa
AA seq
DB search
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI
DDESYHLLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEVIRNDLLQNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDADSDMDV
DDDRKPIPSRVKREAVEPDGKDKDGVKGVMERGKGFDVGMEESGSTTKVSGVNSVGMDEA
GVKMEEEGTTNKSGGDQVFPKT
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggacaccggaggaaactcgctggcctctggaccagacggtgtgaagaggaaagtgtgc
tacttctacgacccagaggttgggaactactactacggccaaggccaccccatgaagcct
caccgcatccgcatgacgcacgctctcctcgctcactacggtctcctccagcacatgcaa
gtcctcaagcctttccccgcccgtgaccgtgacctctgccgcttccacgccgacgactac
gtctcctttctccgcagcattacgcccgagactcagcaggatcagatccgccagctcaag
cggttcaacgttggtgaagactgtcctgtctttgacgggctttattccttttgtcagacg
tatgctggtggctctgttggtggttctgttaagcttaaccatgggctttgtgatattgct
attaactgggctggtggtcttcatcatgctaagaagtgtgaggcctctggcttctgctac
gttaatgatatcgtcttagctatccttgagctgcttaagcagcatgagcgtgttctgtac
gttgatatcgacattcaccacggggacggagtggaggaggcgttttacgctaccgacagg
gtcatgaccgtctcgttccataagttcggagactacttccccggtacaggccacatacaa
gacattggctacggaagtggaaagtactattcactcaacgtaccactggacgatggtatc
gacgatgagagctatcatctcttgttcaaacccatcatggggaaagtgatggaaattttc
aaaccaggtgcggtcgtactccaatgcggcgctgattccttgtctggcgataggctggga
tgctttaacctctccatcaaaggccatgccgagtgtgtcaagttcatgagatctttcaac
gttccgttactgctccttggtggtggtggttacaccatccgcaacgttgcgcgttgctgg
tgctacgagactggagttgcgcttgggatcgaggtcgaggacaagatgccggagcatgag
tactatgagtactttggtccggactatacgctccacgttgctccgagtaacatggagaac
aagaactctcggcagatgcttgaagtgattcgtaatgacttgctccagaatctctcgaag
cttcagcatgctcctagtgtgccgtttcaggaaaggccgccagatactgagactcctgag
gtagatgaagaccaagaagatggagataaaagatgggatgcagattctgacatggatgta
gatgatgatcgtaaacctataccaagcagagtgaaaagagaagctgttgagcctgatgga
aaggacaaggatggagtgaaaggagtgatggagcgtgggaaaggttttgatgtgggcatg
gaggagagtggaagcaccaccaaggtttcaggagtaaactcagtgggaatggatgaagca
ggtgtgaaaatggaagaggaaggcacaacaaacaagtcagggggagatcaagtgtttcct
aaaacctaa
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