Brassica rapa (field mustard): 103850278
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Entry
103850278 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103850278
03015 mRNA surveillance pathway
103850278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103850278
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103850278
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103850278
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103850278
NCBI-ProteinID:
XP_009125248
UniProt:
M4EID2
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All DBs
Position
A7
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AA seq
491 aa
AA seq
DB search
MADTVEKVSTTEASSSSAEAPIPAEITEPTTTEKTKWGDVEDDDEEEANAVSELNSLTIK
EESVLDEPEDSSIKAVTSGETPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLP
MIITPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPSLREPQALCICPTRELAIQNMEVLQK
MGKFTGITAELAVPESNHGVTSARRAHVSAQVVIGTPGTLKKWIAFKKLGLNHLKILVFD
EADHMLATDGFRDDSLRIMKDIERVNPKYQVLLFSATFNETVKDFVQRTVKDPNQLFVKR
EDLKLDSVKQYKVVCPREQNKIEVIKDQIMELGDIGQTIIFVKTKVSAGKVHKALADMGY
DVTSVHGNMTQEDRDKIVKEFKDCLTQVLIATDVLARGFDQQRVNLVVNYNLPTKYDTGE
PDYEVYLHRVGRAGRFGRKGAVFNLLLDDRREIEVMEKIERYFEAQVKEIKSWNSEEEYK
SALKEAGLLDE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactgtagagaaagtctccaccactgaagcatcttcatcctccgcggaagca
ccaatccccgccgagataacagagcccacgacaacggagaagacaaagtggggcgatgtt
gaggatgacgacgaagaggaagctaacgcagtttcggagctcaattccttgactatcaag
gaggaatctgtgcttgacgaacccgaagactccagcatcaaagcggttacttccggtgag
acaccatatacatcagcgagtaggtttgaagatttgaacttgtcacctgagttaatgaaa
ggcttatacgttgagatgaagttcgagaagcccagcaagatccaagccatcagtttgcct
atgataatcactccgcctcacaagcacctcattgctcaggcgcataacggatctggcaag
accacctgtttcgttcttgggatgcttagccgtgttgaccccagtctgagggagcctcaa
gctctttgcatctgtcccacccgagaactagctatccagaatatggaagttcttcagaag
atggggaagtttactgggatcactgcggagctagctgtccctgagtcgaatcatggtgta
acctctgcaagaagagcacatgtttcagcgcaagttgtgattggcacccctgggacgctt
aagaagtggatagcgtttaagaagctgggtcttaatcatctgaagattctcgtttttgat
gaggctgaccatatgcttgctaccgatggctttagggatgattccttgaggataatgaag
gacattgagagagttaatccaaagtaccaggttcttctgttctcggcaacttttaacgaa
acagtcaaagattttgttcagaggacggtcaaggacccgaaccaactatttgtgaaaaga
gaggatctgaagttggactcagtaaagcagtataaggtggtttgcccaagggagcagaac
aagatcgaagtcatcaaggatcagattatggagctcggagacattggccagaccataata
ttcgtgaaaactaaggtgtcagcaggcaaagtgcacaaagctcttgcggatatggggtat
gatgtcaccagtgttcatggtaatatgacccaagaggacagagataagatagtgaaggag
ttcaaagactgcctaactcaagtcctcattgcaaccgatgttcttgcaagaggttttgac
caacagcgggtgaatctggttgtcaattataatctgcctactaagtatgacaccggtgag
ccagattatgaggtttaccttcacagagttggaagagctggccggtttggtcgtaaagga
gctgtattcaacctcctcctagatgataggagggagatagaggtgatggagaagatagag
cgctacttcgaagcacaggttaaagagataaagtcttggaattcagaggaagagtacaag
agcgcactcaaagaagctggcctgcttgatgagtaa
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