Brassica rapa (field mustard): 103850590
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Entry
103850590 CDS
T03449
Name
(RefSeq) uncharacterized protein LOC103850590 isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103850590
Membrane trafficking [BR:
brp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
103850590
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
103850590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Synaptobrevin
WD40_Prp19
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_VPS8
WDR55
Beta-prop_RIG_2nd
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
103850590
NCBI-ProteinID:
XP_009125606
LinkDB
All DBs
Position
A02:883154..892042
Genome browser
AA seq
1121 aa
AA seq
DB search
MFVRKFLQKASGDGGQKPPPSPAPPPRGCLIKEELDPRIVSHYGIPSTASILAFDSIQSL
LAVGTLDGRIKVIGGDNIEAVLASPKQLPFKNLEFIENQGFLVSISNENDIQVWDLDLRQ
TVSSLHWESNITAFSILPGTGYMYVGDEYGTVSVVKYNADEGKLVHLPYYVPTDALAEAA
GLSSPIEYPVVGLLSQPCSRGTRLLIAFSNGLLFIWDASEDRVELVRGNKDLPMEGKTVD
VSLEASHDELSDLKLDGKEISSLCWASADGSVLAVGYVDGDILFWDFSDGKNVKVSNNAV
KLQLSSAEKRLPVIVMHWGLDVSRKNCGGKLFIYGGDIVGSDEVLTMLALDWSSGMGGLK
CVGRVDRTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQAYDDTSLASLMSQKENNIS
VSPLPYPMVVPTMDPRITVAMFAALNVNDKPSLALSEVVLAAKSRTPRTPSGERAQWPLT
GGVPGHIDDYKLERLYIAGYQDGSVRIWDATYPCLSLIYDLKPKANGIEITGVDASVTAV
TFCSKTSCLAVGNECGMVRLLKLVGHKSGGTLEVVTNTDKQGLELFTTLTVQICSVVSHA
LGLFLVAHRLDQEDGPQWLAAYSFLTSPVCTLRFVQSTRRLVVGFKCGKVAMLDISAPSV
MFVTDSLSDTGFPIKSLCVKSPSAPTDQDSINSEALDDFILCAMTKDGQTTLIDGNTGKI
LASCLRPLKNPTAICMHIIEDCYDKTEMPSEKPAENPSEKEKHENKSHMTSESESHSPGG
EQTAVTETKLADQRFANSLFLMCSEDALRLYSLKLSQGSFESIMEVSVSRPCCWMGILKK
DERECAVLLLYRTGHIEIRSFPDLEVVGESSLPSLLRWNFKPNMEKTVCSDDLGHLVLVN
GCEVAILSFLAHANGFRIPESLPLLHDKVLAAAADATFSHFPVHKKDQDGTPKFLSGIIK
GFRSSSEQKVDHQIQDFSHLGNIFSNPPYLKPSDTDHDDEKIVELNIDDIEIDEPLSILP
LTEKDKKENKDKRTDKERLFDGASSDAQPKTRTVDEIKAKYRKAGETSAIASQAKDKLLE
RGEKLERISQRTAELQDGAENFASMAHELAKQMEKRKWWNI
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtcagaaaatttctgcagaaagcctccggcgatggtggtcagaagcctcctcca
tctccagctcccccgccacgtggatgtttgataaaagaagagttggatcctcgtatcgtc
tcccactatgggataccttcgacggcgtctattcttgcctttgactctatccaatccctc
ttggctgtgggaacactagatggaaggataaaagtgattggtggtgataacattgaggcg
gttcttgcttctcctaagcagttacctttcaaaaacttagagttcattgagaaccaaggc
tttctggtcagcatctcaaacgaaaacgatattcaggtttgggacttggatcttaggcag
actgtgtcaagcttacactgggagtcaaacattactgcgttttcaatccttcccggcacc
ggttacatgtatgttggtgatgagtatggtacggtgtctgttgtaaaatacaatgctgac
gaaggaaaattagtgcatcttccttattatgttccaactgatgctttagcggaagcagcg
gggctttcatcacctattgagtatcctgttgtcggacttctttctcagccttgttcgagg
ggaactaggttgttgatcgcattttcaaatggattactttttatttgggatgcatcagaa
gatcgcgtcgagttagttcgaggaaacaaagacctacctatggagggtaagacagtcgat
gtttctctggaagcctcacacgatgagctttctgatcttaagctagatggaaaagagata
agttctttgtgttgggcatcagctgatggttcagttcttgctgttggttatgtcgatgga
gatatattattttgggatttctctgatgggaagaatgtgaaggtatctaataatgctgtt
aagttacagttgtcttcggcggagaaaagacttcctgtcattgttatgcattggggtttg
gatgtatctcgcaagaattgtggtggaaaactctttatctatggtggtgatatcgttggt
tctgacgaagtactgacgatgttggctctggattggtcttctggtatgggaggtctgaaa
tgtgttggccgtgttgaccggacccttagtggttcatttgctgatatggtcttgtctcca
attgctagttcaaggcaaagtggggtgtttttatttctgctgacgaatccaggacaattg
caagcgtacgatgatacctctctggcttctctgatgtctcagaaagagaataatatttct
gtttctcccctgccatatccaatggttgtaccaacgatggatccacgtatcaccgtagca
atgtttgctgcattaaatgttaacgataagccgtcactggctctttccgaggtagtctta
gctgcaaaatctcgaacgccacgtactccatctggagaaagggcgcaatggcctctaaca
ggtggtgttccaggccacattgatgactacaagcttgagagactgtacattgcaggatat
caagatgggtctgtgcgaatatgggatgcaacctatccatgtctgtctcttatttatgac
ttgaagccaaaggcaaatggtattgagataactggagtagatgcatcagtaacagcagtt
accttctgttctaagacttcttgtttggctgttggtaacgaatgtggtatggttcgtctt
ctcaagttggtcggccataaaagtggaggaactttggaagttgttaccaacactgacaaa
caaggtttggaactttttacaacgttgactgtacagatttgctctgttgtatctcatgcg
ttaggtttatttcttgtagctcaccgtttggatcaagaagatggacctcaatggttggca
gcgtattctttcctgacttccccagtttgcaccctgcgatttgtacagtctacaagaagg
cttgttgtgggatttaaatgtggcaaggttgcaatgcttgacattagtgcgccatcagta
atgttcgttacagatagcttatctgacaccggtttcccaatcaagtcactctgtgtgaaa
tccccttcagctccaactgatcaggattccataaattccgaagctcttgatgattttatc
ttgtgtgcgatgactaaagatggacagaccactcttattgatggaaatactgggaaaata
ctcgcctcatgcttgagacctctgaagaacccaactgcgatttgtatgcacattatagag
gactgctatgataaaactgaaatgcccagtgaaaaaccagctgaaaatccatctgagaag
gagaaacatgagaacaaatctcatatgaccagtgaaagtgagagtcattcaccaggtggt
gaacagactgctgttacagaaacaaaacttgctgaccagagatttgcgaattcattattt
ctcatgtgttctgaggatgcactacgcttgtattccctaaaattgtctcagggaagtttt
gagagcattatggaggtaagcgtttcaaggccgtgttgctggatgggaatcctaaagaag
gatgaaagggaatgtgctgtactcctactttaccgaacagggcatattgaaataagatct
ttcccggatcttgaagttgtgggagaaagctctttgccgtcacttcttaggtggaacttt
aagcctaacatggagaagacagtatgttcagatgatttaggccatctcgtcctggtaaat
ggttgtgaagttgcaatcctctcgtttctggcccatgcaaacggattcagaatcccggag
tctttacctttgcttcatgacaaagtccttgcagccgctgccgacgctacctttagccat
ttccctgtccataagaaagaccaggatggcactcccaaattcctaagtggcattattaaa
ggcttcaggtcaagcagtgaacagaaggtggaccaccaaatacaagatttctcccacctg
ggaaacatcttttctaatccgccatacttaaagccttctgataccgatcacgacgatgaa
aagattgtcgagctaaacatagatgacatcgagatagatgaacctctgagcatcttgccc
ttaaccgagaaagacaaaaaggaaaataaagataagagaacagataaggaaagactgttt
gacggtgcatccagtgatgcacaacccaaaacgagaacagttgatgagataaaggccaaa
tacagaaaagcaggggaaacctcagcaatagcttcacaagcaaaggacaaacttcttgag
cgtggagaaaaactcgagaggatcagccaacgcacagctgagcttcaagacggtgctgag
aactttgcatcgatggcacatgaacttgctaagcaaatggagaagcgaaaatggtggaac
atatga
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