Brassica rapa (field mustard): 103850757
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Entry
103850757 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103850757
09122 Translation
03013 Nucleocytoplasmic transport
103850757
03015 mRNA surveillance pathway
103850757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103850757
03041 Spliceosome [BR:
brp03041
]
103850757
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103850757
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103850757
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103850757
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103850757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103850757
NCBI-ProteinID:
XP_009125790
UniProt:
M4E3F9
LinkDB
All DBs
Position
A02:complement(1846218..1849476)
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AA seq
427 aa
AA seq
DB search
MGDVRDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKDLLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGEMEKNRKLNDLLDALDFNQVVIFVKSVSR
ARELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQARFEVDIKQLPENID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgttagggacaacgaagcttatgaggaggagctcctagactatgaggaagag
gacgagaaggtcttggattctgggaataaagttaacggcgatgccgtgaagaaaggttac
gtgggaatacacagttctggattcagagacttccttttgaaacctgagcttctccgagct
attgttgattctggatttgaacatccatctgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagctaaatccggtatggggaagactgctgttttt
gtgctttctactctgcaacagattgagccaactcctggccaggtgtctgcgcttatactg
tgccatacaagagagttagcttatcagatctgcaatgagttcgtgcgtttcagtacctat
ctgcctgatactaaggtttcagtgttctatggaggagtcaacaacaaaattcacaaagac
ttgctgaagaacgaatgtcctcacattgttgttggaacacctggtcgtgtgcttggactc
gccagggacaaagatctctcgttgaagaatgttaggcattttattcttgacgagtgcgat
aaaatgctggagtctctcgacatgcggagggatgtgcaggagattttcaagatgactcct
cacgagaaacaagttatgatgttctcagcaactctcagcaaggagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catgggcttgtccagcattacatcaaactgggcgagatggagaaaaaccgcaagttgaat
gaccttcttgacgcactggacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctcgggagctgaacaagctgcttatcgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagaga
atactggtggcgacagacttggtagggagaggcattgacattgagcgtgtcaacattgtc
atcaactatgacatgccagactctgctgatacatatcttcacagggtggggagagctggt
aggtttggaacaaagggtctagcaatcacatttgtggcatctgcttcggactcggaagtt
cttaatcaggtgcaagccaggttcgaggttgatataaagcaacttcctgagaatattgat
acttctacttacatgccgtcctaa
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