Brassica rapa (field mustard): 103850759
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Entry
103850759 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103850759
09122 Translation
03013 Nucleocytoplasmic transport
103850759
03015 mRNA surveillance pathway
103850759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103850759
03041 Spliceosome [BR:
brp03041
]
103850759
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103850759
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103850759
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103850759
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103850759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
103850759
NCBI-ProteinID:
XP_009125794
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All DBs
Position
A02:1849642..1853102
Genome browser
AA seq
427 aa
AA seq
DB search
MEDPRDNEAYEEELLDYEEEDEKAPDSANKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKDLLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQDRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccctagagacaacgaagcctacgaggaggagctcctagactacgaggaagag
gacgagaaagccccagattccgcaaataaagttaacggcgacgccgttaagaaaggttac
gtggggatacacagttctggattcagagacttccttttgaaacctgagcttctccgagct
attgttgactctggatttgaacatccatccgaagtgcaacacgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagctaaatctggtatgggcaagactgctgtcttt
gttctttcgactctgcaacagatcgagccaactcctggccaggtgtctgcacttatcctg
tgccatacaagagagttagcttaccagatttgcaatgagttcgtgaggttcagtacctat
ctgcctgatactaaggtttcagtgttctatggaggagtcaacaataaaattcacaaagac
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgtgtccttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattctcgacgagtgtgat
aaaatgctggagtccctcgacatgcgaagggatgtgcaggagattttcaagatgactcct
cacgacaaacaagttatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaaattgactctt
catgggcttgtccagcactacatcaaactgagcgagatggagaaaaaccgcaagttgaat
gaccttctggacgctttggatttcaatcaagttgtcatatttgtgaagagcgttagccga
gctggggagctcaacaagttgcttattgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagaaaggctgacccactacaaaagtttcaaggaagggcacaagaga
attctggtggcgacagacttggtagggagaggcattgacattgagcgagtcaacattgtc
atcaactatgatatgccagattctgctgatacatatctccacagggttgggagagctggt
aggtttggaacaaagggtcttgcaatcacatttgtggcatcagcttcggactctgaagtt
cttaatcaggtacaagacaggtttgaagttgatataaaggaacttcctgagcagattgat
acttccacatacatgccgtcttaa
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