Brassica rapa (field mustard): 103850935
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Entry
103850935 CDS
T03449
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103850935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103850935
03036 Chromosome and associated proteins [BR:
brp03036
]
103850935
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103850935
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
103850935
COMPASS/SET1 complex (yeast)
103850935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
PQQ_3
NBCH_WD40
Methyltransf_13
MIOS_WD40
Beta-prop_NWD2_C
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
103850935
NCBI-ProteinID:
XP_009125982
UniProt:
M4E3X0
LinkDB
All DBs
Position
A02:complement(2616158..2618512)
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AA seq
332 aa
AA seq
DB search
MSLTELDDGLVRSMAIGAVFSDFGGKIRSVGFHRTDDLLVTSSEDDSLRLFDIANAKQVK
VTYHKKHGTDRVCFTHHPSSLICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSL
CMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKL
FDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSL
EPSQGTSLEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVASCLKWAPRRAM
FVAASTVLTFWIPNDGEAPAPADPSADQQRPQ
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgacggagctagacgacggacttgtacgcagcatggccatcggagcagtcttc
tccgacttcggagggaagatacgttcggtggggttccacaggactgatgatctgctggtg
acgtcgagcgaggacgattcgcttcgtctcttcgatatcgccaacgctaaacaggtgaag
gtaacatatcataagaaacatgggactgatcgtgtatgctttacacatcatcccagctct
cttatttgctcttctctatacaatcttgagtccactggagaatctctgagatatctctca
atgtatgataatcggatccttcgctactttaaaggccacaaagacagggttgtttcgctt
tgtatgtcgcctattaatgatagcttcatgtctggttctttagacagaagtgtcagactc
tgggatcttcgtgttaatgcctgccagggaattctacacctacgtgggagacctgcggta
gcttacgaccaacaaggcctggtgtttgcaattgcaatggaaggaggtgctgttaagtta
tttgattccagatgttatgacaagggtccctttgacacatttctggtgggtggtgatact
gctgaggttaacgatattaaattcagcaacgatggaaaatctatgcttcttactaccaca
aataacaatatctacgttcttgacgcatatcatggagagaagaaatgtggttttagtttg
gagccttcacagggtacatccctagaagccaccttcacgccagatggcaagtatgttctg
tcaggttcaggagatggaaccttacatgcgtggaacatcgagaacccatctgaggtggcg
aggtgggagaacaacataggagtagcgtcgtgtctgaaatgggcaccgcgtagagcaatg
ttcgttgctgcctctacggttctcactttctggatccccaacgacggcgaggcaccagcc
cccgctgatccttctgccgaccaacaacgtcctcagtga
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integrated database retrieval system
