Brassica rapa (field mustard): 103850938
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Entry
103850938 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103850938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103850938
03009 Ribosome biogenesis [BR:
brp03009
]
103850938
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103850938
Spliceosome [BR:
brp03041
]
Complex A
U1 snRNP components
U1 related factors
103850938
Complex B
103850938
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103850938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103850938
NCBI-ProteinID:
XP_018512495
UniProt:
M4E3X5
LinkDB
All DBs
Position
A02:2629585..2633463
Genome browser
AA seq
676 aa
AA seq
DB search
MAATATASTIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPPGLAPPKPSPA
PVSSSVQAQQQPSSGYSSGKQEDKYDRDNDGAKNDSGSRFSEASRSGPVNSSNAANGPGN
ASSGGSSAVVPPPSAAAVEKMSPEAYCRRHEITVTGGQVPPPLMSFEATGFPPELLRELY
GAGFSAPSPIQAQSWPVAMQNRDIVAVAKTGSGKTLGYLIPGFMHLQRVRNDSRMGPTIL
VLSPTRELATQIQAEALKFGKSSRISCACLYGGAPKGPQLKEIERGVDIVIATPGRLNDI
LEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAS
DLLSSPAQVNIGNVDELVANKSITQTIEVIPPMEKQRRLEQILRSQEPGSKIIIFCSTKR
MCDTLARNLTRTFGANAIHGDKSQQERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVV
VNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGASQKVPQEVRE
LATRGGGMNKFRRWGTPSGGGGGGYGDSGYGGRGGGRGDSGYGGRGDSGYGGRGGSGYGG
RGDSGYGGRGDSGYGGRGGSGYGGRGGGDSRDSSGRGSGWGRERSRSPERFSRAAAGPST
SSPPRSFHEAMMMRQK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagctactgcttcgacgattcgttacgcgcctgaggatcctaacctccct
aagccgtggaaaggtcttgtggatagcagaaccgggtacttgtacttttggaatccggag
actaacgttactcagtacgagagaccacctggcttagctcctcccaaaccttctcctgct
cctgtaagctcttcggttcaggctcagcaacaaccttcttctgggtacagttctggaaag
caagaggataagtatgacagggacaacgatggggctaagaatgactctggatcaaggttt
agtgaggcaagcagaagtggacctgtgaattcaagtaacgctgccaatggaccagggaat
gcttcgtctggtggatcgtctgccgtagtgcctcctccttcggctgcagcggttgaaaaa
atgtctccagaggcttattgccgccgccatgaaattactgtcactggaggccaagtaccg
ccacctttgatgtcttttgaagcaactggtttccctccagagcttctgcgggagttatac
ggtgcagggttctctgctccaagtccaatccaagctcagtcatggccagttgcgatgcag
aacagagacattgtagccgttgctaaaacaggctctggaaaaactctcggttacttgatc
ccaggcttcatgcatctccagcgtgtccgcaatgattcaagaatgggcccaacgatcttg
gtactgtcacctactagagagctagccacacagatccaagctgaagctttgaagtttggg
aagtcatcaagaatctcctgtgcctgtttgtatggtggagcaccaaagggtcctcagcta
aaggaaatagagagaggtgtcgatatcgtcattgcaactccagggagattgaatgatatc
cttgagatgaagaggatcagtctacaccaagtgtcttaccttgtcctggacgaggctgat
agaatgctggacatggggttcgagcctcagatcaggaagattgtgaacgaggttcccact
aagcgtcagacactcatgtacacagccacgtggcctaaagaggtcaggaaaatcgcgtct
gatctgctctctagccctgctcaggtcaacatcggtaacgtcgatgagctcgtagccaac
aagtctattactcagactattgaagtgataccaccgatggagaaacaaagaaggttggag
cagatactgcggtctcaggagccaggctccaagattatcatcttctgttcgaccaagagg
atgtgtgatacactcgcgaggaacttgacgcgcacgtttggagctaacgccatacatgga
gacaagtctcagcaagagagagatgatgtgctgaatcagtttaggagcgggaggactcct
gttctcgttgcaaccgatgtagctgctcgtggacttgatgttaaagacatcagggtggtg
gtgaactatgatttcccaaatggagttgaggactatgttcataggatcggaagaacggga
agagctggagcaacggggttagcttacactttcttcggggatcaagatgcaaaacatgct
tctgatctgatcaagatcttggaaggagcaagtcagaaagtccctcaggaggtccgtgag
ttggctactcgcggtggtggtatgaacaagttccgtcgctggggtacaccttctggtggt
ggcggtggcggctatggtgattctggttatggtggtcgtggtggtggccgtggtgactct
ggttatggtggtcgtggtgattctggttatggaggtcgaggtggttctggttatggtggt
cgaggtgattccggttatggtggtcgaggtgattctggttatggtgggcgtggtggttcc
ggttatggtggacgtggtggtggtgattcacgtgacagcagtggtcgtggctcaggatgg
ggaagagagagaagccgtagtccagagagattcagcagagctgctgctggaccgtcgact
tcctcaccgcctcgcagttttcacgaggctatgatgatgagacagaagtaa
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