Brassica rapa (field mustard): 103850988
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Entry
103850988 CDS
T03449
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103850988
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
103850988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
TPR_DNAAF5
zf-RING_15
INTS1_R4
PHD-1st_NSD
PHD_2
API5
zf-HC5HC2H
Porphobil_deam
PHD_4
Motif
Other DBs
NCBI-GeneID:
103850988
NCBI-ProteinID:
XP_009126054
UniProt:
M4E419
LinkDB
All DBs
Position
A02:complement(2866346..2876183)
Genome browser
AA seq
1841 aa
AA seq
DB search
MSNPSSSGLGSTSSLTQFGIGLANTAQSDVASHLPLPSLPIFCGAAQPGELKLFDEVAEG
SGYRSLNRAEILSQSRRIAKMLEETDVSYLDLRNEARELNCNSEEPFQLYDQVLRCNPGA
FEYAIPGPTCDPVCTSEEPQQRTSEPSVPVKIQRQADHHLPRSIQPEPVKRVLRSKHVEN
HSWHPEPLINQSPRDDIATHDSRPETITMNDSASKKSTGKKKRKDGAGPGASSVQPDSSV
LQESIVNSFCEMLEDFCGKAEVPGDDRNEAEWSSVPVDEIRVLVTELMTIRSKMLLHVVP
VDILSRLLHTLDHQIHRAEGLSINSEHSDSDSLELVLGALESIHVSLAVMANSDMPKQLY
KEEVIERILEFSRHQMMAVMSAYDPSYRSASKPADNVAFEGDDDDDLDPDMGSASKRRRT
GKSGKVKKSAVNRITGTVNTALQKLCTILGLLKELLLVERLSDSCILQLLKTSVTTFMVE
NIQLLQLKAISLIGGIYNSYPQHRTYVIDELSQLLWKLPSSKRVLRAYHLPDEEQKQIQM
VTALLIQLVHNSTSLPETLRQASSANAILENPVDVGYLTKCHEAATETCCLFWTRVLGRL
ASLKAQDASEIKVMTENIVNDLLTALNLPEYPSVSLILEVLCVILLHNAGLKSKDVSARS
MAIDLLGIIATRLKQDAVLCSEDRFWTLLESESEGRVDQVGTKDCALCLGKRAGNLLICQ
ICPRRFHAGCLGLKEVDIPSRNWHCPFCVYKRQLLVLQSYCKTDTKSGKVESEEDPNMIT
QTEVVQQMLLNYLQDAGSADDAHTFICWFHLCLSYKDVPKSQEKFKYYIARLKAKSIIRN
SGATTSFLTRDAIKKITLALGRNSSFSRGFDKILHMLLASLRENSPIIRAKAMRAVSTIV
EADPEVLCDKRVQLAVEGRFCDSAISVREAALELVGRHIASHPDVGSKYFEKVAERIKDT
GVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDESSIQDLVCKTFYEFWFEEPP
GHHTQFTSDASSIPVEVEKKTKQMVGLLRTTPNHQLLVTIIKRALALDFFPQATKAAGIN
PVALASVRRRCELMCKCLLEKILQVEEMSREGEVQVLPYVLLLHAFCLVDPGLCTPSSDP
TKFVITLQPYLKSQVDSRIGAQLLESIIFIIDSVLPLIRKLPISVTEDLEQDLKHMIVRH
SFLTVVHACVRCLCSVSKLMGKGVSVVEHLLQFFFKRLESQGADNNQIAGRSLFCLGLLI
RHGNSLISTSGSRSFNLSGCLNLFKRHLRMEDFALKVRSLQALGFILIARPEYMLEEDIG
KIIENTLSDEANGRMKMQGLQNMYDYLIDAEKQLGSDKSVDITVNPVEQGGHTVPVAAGA
GDTNICGGIVQLYWDKILGRCLDCDDQIRQIALKIVEVVLRQGLVHPITCVPYLIALETD
PLEANQKLAHHLLMNMHEKYPAFFESRLGDGLQMSFIFMQSISQVYSESNQNPQQKCSGK
NDHTSSSLTQARLGVSRIYKLIRGNRISRNKFMTSIVRKFDNPTWSGSVISFLMYCTETL
ALLPFTTPDEPLYLVYSINRVIQVRAGAIESNLKALLHKDSAKTQHGNGTYQQDSTPANI
HMMDLNTRIQEEHTHWNSYGHSTPIDLNGVVYQDPRDQFISYQTHYGEANVHKMTSSDPP
ELSTDDLQKIKVDCLSAIALQLLLKLKRYLKVTYSLNDERCQAYSPTEPLKPGDPLSRQN
VAFDLSDTRTDLPSTYQDLVLRYQEFKNAMREDTLDYTIYSSNVKRKRPTPRKSSRSAKK
AVAYNDDDDDEDDDDRGWNGGGGRGMTARRLNYSTRNSNRR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcccagcagctccggattgggttcaacttcgagtttgactcagttcgggatc
ggtttggctaatacggcgcagtcggatgttgcttctcacttgccgctaccttccctcccc
atattctgcggcgcggctcaacctggcgagctcaagctcttcgatgaggttgccgaaggt
agtggctacaggtcgttgaatcgcgctgagattctctcgcaatctaggagaatcgcgaag
atgcttgaagaaactgacgtttcttacctggatcttaggaacgaggctagggagctcaac
tgtaattctgaggagccttttcagttatatgaccaagttttacgatgcaatcctggagca
tttgagtatgctatccctggtccgacctgtgatccagtctgtaccagtgaagagcctcaa
cagagaacttccgagccaagtgttcctgtcaagattcaacgacaggcagatcatcattta
cctaggagtatccagcctgaacctgtgaaaagggtattacgatcaaaacatgttgaaaat
catagttggcatcctgaacctttgataaaccagtcaccacgagatgatattgcaactcat
gactctcgacctgaaacgatcaccatgaatgattctgcttccaaaaagtcaacgggcaag
aagaaacgtaaagatggcgctggccctggtgcgtcttcagttcagccagattcatctgtg
cttcaagagtccatcgtaaatagcttttgtgagatgctggaggacttctgtggcaaagct
gaagtccctggtgatgataggaatgaagcagagtggtcgtcagtgcctgttgatgaaatt
cgtgttcttgtaactgaattgatgactataaggtcaaaaatgcttttgcatgtggtacct
gttgatattctatcgaggttattgcacactctggatcatcagatacatagggccgaaggc
ttgtccattaatagtgagcattcagattcagattcattggagttggttcttggtgccctt
gagtcgatccatgtatcgcttgcagtgatggccaacagtgatatgccaaagcagctctac
aaggaagaggtgattgagagaattctggagttttctaggcatcaaatgatggctgttatg
tctgcttatgatccatcataccgcagcgcaagtaaacccgcagataatgttgcatttgaa
ggggatgatgatgatgatcttgatcctgacatgggctcagccagtaaaaggcggcgcaca
ggaaaaagtggcaaagtgaagaagtcggcagtgaacaggatcactggaacagtgaatacc
gcactacagaaactttgcactattcttggcttactcaaggagctgttgttggtagaaagg
ttgtctgacagttgcattttacaactgttgaagacaagtgtgacaacatttatggtggaa
aatatccaacttctgcagcttaaagcaattagcttaatcggtggtatatataattcatat
cctcaacaccgaacatatgtgatagatgagttatctcaattgctctggaagctaccttcc
tcaaaacgagtgttgagagcctaccatctacctgatgaagaacaaaagcagattcaaatg
gtcactgctttgctcattcagttggttcacaacagcacaagccttcctgaaaccctgaga
caggcttccagtgcaaacgccatactggagaatccagttgatgtcggctacctaactaaa
tgtcatgaggcggctacagaaacatgttgccttttctggactcgtgtccttggacgactt
gccagtttaaaggctcaggatgcttctgagataaaagtgatgactgagaacattgttaat
gatctactgactgcattgaatcttcctgaatatccatcagtttctcttattcttgaggtt
ctctgtgtcatactgctgcacaatgcagggttgaaatcaaaagatgtctctgcccggtca
atggccattgacttactaggtataattgctaccaggttgaaacaagatgctgtcctctgc
agtgaagacagattttggacattactagaatcagaaagtgaaggtagagttgaccaagtt
ggcacaaaagattgcgctctttgtttaggtaaaagggctgggaacttattgatctgtcaa
atttgtccaaggcggtttcatgctggctgtttgggtttaaaggaagtagacatcccaagt
cgaaattggcactgtccgttttgcgtatacaagaggcaacttcttgtactgcagtcttac
tgtaagacggacaccaagagtggtaaggttgagtcagaagaagatccaaatatgattaca
cagacagaagttgtgcaacagatgctcctgaattatcttcaggatgctggatctgctgat
gatgcgcatactttcatttgctggtttcatctgtgcctttcgtataaagatgttccaaaa
tctcaggaaaaattcaaatattacattgctagattgaaagcaaagtcaataatccgtaac
tctggagcaactacgtcgttcttgacaagagatgctataaagaagattactttagctctt
ggacgaaatagttccttttccagaggatttgataagattctacacatgctcctggctagt
ttaagagagaactctcccattattagggctaaagctatgcgagcagttagtacaattgtt
gaagctgatccagaggtactgtgcgataagcgtgttcagttggctgttgaaggaaggttt
tgtgattctgctatatctgttagagaagcagcacttgaacttgttggtaggcatattgcc
tcacatcctgatgttggttcaaagtattttgagaaggtcgccgagaggattaaagatact
ggagtgagtgttcgaaaacgagccataaagatcatacgtgacatgtgtacttcaaatccc
aacttctctgaatttacaagtgcatgtgccgagatattatctcgaatcagtgatgatgaa
tctagcatccaggatcttgtatgcaaaactttctatgaattttggtttgaggaacctcca
gggcatcatactcaatttaccagtgatgctagctccattccagtggaagtggaaaagaaa
actaagcaaatggttgggttgttaaggacgactccaaatcaccagcttcttgtaacaatt
attaagcgtgccctggcccttgattttttccctcaagcaaccaaagctgctggtatcaac
ccagttgcccttgcatcagtacgcaggcgctgtgagctgatgtgcaagtgcttactggaa
aaaatattgcaggtagaagaaatgagccgtgaaggagaggttcaagtgcttccttatgta
cttcttttgcatgctttctgtctggtggatcctgggctgtgtacaccgtcttcagaccct
actaagtttgttatcaccctacaaccatatctgaagagtcaggttgatagtagaatagga
gcacagttactagagagtattatattcataatcgattctgtcctgcccttgatccgcaag
ctgcctattagtgtcactgaagacctggagcaagatctaaagcatatgattgttcggcat
tcatttctaactgttgtccatgcttgcgttaggtgtctctgttctgtgagtaaattgatg
ggaaaaggtgttagcgtggtcgagcatcttcttcagttcttttttaagcggttggagtcc
cagggggctgataacaaccagattgctgggcggtcccttttttgtcttgggttgcttatt
cgccatggtaactctcttattagcacctccggtagtaggagtttcaatctctctggctgt
ctcaatttattcaaacgacacctccgcatggaagattttgctttgaaagtcaggtccctg
caggctttaggtttcattctgattgcacggcctgaatacatgttggaagaagacattgga
aaaataatcgagaatacattatcagatgaagcaaacggacgtatgaagatgcaaggatta
cagaacatgtatgattaccttatcgatgcggaaaaacaattgggatcagataaatctgtt
gatatcacggttaacccagttgagcaaggtggacatactgtacccgtggccgctggtgca
ggtgacaccaacatttgcggaggtattgtgcagttgtattgggataagatattaggtaga
tgcttggactgtgatgatcaaattcgccagattgctctcaagatagtggaagtcgtgcta
cgtcaaggtcttgttcatcctattacatgtgttccttatttgattgccctcgagacagat
ccgctcgaggccaaccaaaagctggcccatcatttactaatgaatatgcatgagaagtat
ccggcttttttcgaaagccgtctcggtgacggacttcaaatgtcgtttatcttcatgcaa
tccatcagccaggtctattcagaatcaaatcaaaatcctcagcagaagtgttcggggaag
aatgatcatactagtagctctctcacacaagctagacttggagtctctaggatctacaag
cttatccgtggcaacaggatttctcgaaacaaatttatgacttctatcgttcgcaagttt
gataatccaacctggagcggctcggttatatccttcctgatgtattgcactgaaaccctt
gctttacttccattcacaacacctgatgagccgctctatctcgtgtattccataaaccga
gttatacaagtcagggctggtgcaatcgagtcaaatttgaaggctctgttacataaagat
tccgcaaagactcagcatggaaatggaacgtaccaacaagattcgactcctgcaaatatt
cacatgatggatttgaacacaagaattcaagaagaacatacgcattggaattcctatggc
cattcgactccaattgatcttaatggagtagtgtaccaagatcccagggatcagtttatt
tcatatcaaacccattatggcgaagcaaatgtgcacaagatgacctcatctgatcctcct
gaattatccaccgatgatttgcagaaaattaaggttgattgcttatcagcaatagcttta
caactacttttgaagctcaagagatacttaaaagtcacgtacagcttaaatgatgaacgg
tgccaagcctattctccaacggaacccttgaagccaggagatcctctgtccagacaaaac
gttgcctttgacctcagcgatacgcgcactgacttaccttcaacctatcaagacttggtt
ctgagatatcaggagtttaagaacgcgatgagagaagatacacttgactacaccatttac
tcatcaaacgtcaagagaaaacgcccaacgccaagaaaaagctcaagatctgcaaaaaaa
gcagtggcctacaatgatgatgatgatgacgaggatgatgatgacagaggttggaatgga
ggaggaggaaggggtatgactgctcggagactaaattacagcaccagaaatagcaacaga
aggtaa
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integrated database retrieval system
