Brassica rapa (field mustard): 103851856
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Entry
103851856 CDS
T03449
Name
(RefSeq) probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103851856
Enzymes [BR:
brp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
103851856
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
103851856
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
Methyltr_RsmF_N
RsmF-B_ferredox
Methyltransf_31
FtsJ
Motif
Other DBs
NCBI-GeneID:
103851856
NCBI-ProteinID:
XP_009126977
UniProt:
M4F3E4
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All DBs
Position
A02:6621918..6625614
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AA seq
640 aa
AA seq
DB search
MVLTRSSKKAPKPQTPPVKNLSKAQTPPLSKAEKPQTLTSKKGAKSQKKPPLKKQKKDVV
VEEEEVSDVESEEIDESDDGEKGSNGFFSDDDGEELLGDDFLEGSGDEEEVLSSDSDSDS
DEDDIQKESEAIDRAKAKEEEDADAELLDFNKEAGPEEHETFRLPTQEELEEEARGPPDL
PLLQSRIKEIVRALSNFNVLRPKGASRKECVEQLKTDLASYYGYNSFLIGALFELFPPVE
LMEIIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIG
ATPEYLAGYYMLQGASSFLPVMALAPKENERIVDVAAAPGGKTTYVAALMKNTGLIFANE
MKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGERSVDRVLLDAPCSGTGVISKDES
VKTSKSLEDIKRFAHLQKQLLLAAIDLVDATSKTGGYIVYSTCSLMVAENEAVIDYALKK
RNVQLVKTGLDFGQDGYRRFREHRFHPSLKQTKRFYPHVHNMDGFFVAKLKKMSNMKQAS
EDDDEAVETVEQADVSSDDDEEAEAMEEMEKLSVPSKQPKENKERLAKSKEKKKGKKDGK
SKSINVERKPKKKRSDWKKEIAQAREEKRRAMRENSKGKQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggttctcactcgcagcagcaagaaggcgccgaaacctcaaaccccgccggtgaagaac
ctctcgaaagctcagacgcctccgttatcgaaggcagagaaaccacagactctgacatcg
aagaagggagccaagtctcagaagaaacctccgttgaagaagcagaagaaggatgttgtt
gtggaggaggaagaggtttccgatgtagaatcagaagagatagatgaatccgacgatgga
gagaaaggctctaacggattcttctctgacgacgacggtgaagagctcttaggtgatgac
tttttggaaggtagcggcgacgaagaggaggttttgagctctgattctgattccgactcg
gatgaagacgatattcagaaggaatctgaagctattgacagagcgaaagcgaaggaggag
gaagatgctgatgctgagcttctcgatttcaacaaggaagctggacctgaggagcatgag
acatttcgcctaccaactcaagaggagcttgaagaagaagctcgtgggccacctgatctt
cctctactgcagagtagaatcaaagagattgttagagctctgtcgaattttaacgtcttg
aggccaaagggagccagcaggaaagaatgcgttgaacagctcaaaactgatcttgcttct
tattatggctataacagtttccttattggcgctttgtttgagctgtttcctcctgttgaa
cttatggaaatcattgaagcctttgaaaagcaaaggcctacatctattaggacaaacaca
cttaagactcgaagacgggatcttgctgatgtgcttttgaacagaggagtcaatctagac
ccattaagcaagtggtcaaaagtgggacttgttgtttatgattcacaagtgccaatcggt
gccactcctgaatatttggctggttactacatgcttcaaggtgctagttcgtttttgcca
gtgatggcccttgcccctaaagagaacgagcggattgtggatgtagctgctgctcctggt
ggtaaaacaacttacgttgctgctctaatgaaaaatactggtttgatatttgcgaacgag
atgaaagtacctaggctcaagtcgctaactgccaatctgcatcgcatgggggtcacaaat
accatagtttgtaactatgatggaagagagctacccaaggtgttaggtgagagatcggtt
gacagagtattgttggatgcaccttgcagtgggactggggtcatttcgaaagatgaatca
gttaaaacttcgaaatctctagaggatataaagagatttgctcacttgcaaaagcaactt
ttactagctgctattgatttggtggatgccacatccaaaactggtggatatattgtttac
tcaacatgttcacttatggttgctgagaacgaagccgtaattgactatgccctgaaaaag
aggaatgttcaacttgttaaaactggactcgattttggccaagacggatatagaagattt
agagagcaccggtttcatccatctttaaagcagactaaacgtttttatcctcatgtacac
aacatggacggattctttgtggcaaagctgaagaaaatgagcaacatgaaacaagcgtca
gaggatgatgacgaggcggtagaaactgtagaacaagctgatgtgtctagtgatgatgat
gaagaagctgaggcgatggaagagatggagaagctttctgttcccagtaagcaacccaag
gaaaacaaggagagacttgcaaaatcgaaggagaagaagaaaggcaaaaaagatgggaag
tcaaaatctataaatgttgagaggaagccaaagaagaagagatctgattggaagaaggaa
attgctcaagctagggaagagaaacgaagagccatgagggagaactcgaaggggaagcaa
tga
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