KEGG   Brassica rapa (field mustard): 103852294
Entry
103852294         CDS       T03449                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103852294
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103852294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103852294
   03041 Spliceosome [BR:brp03041]
    103852294
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103852294
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103852294
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103852294
SSDB
Motif
Pfam: LSM M11L
Other DBs
NCBI-GeneID: 103852294
NCBI-ProteinID: XP_009127450
UniProt: M4FF66
LinkDB
Position
A02:complement(8996442..8998610)
AA seq 98 aa
MATTTGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcaacaactactggacttgagtctcttgtcgatcagatcatttcggttattacaaac
gatggacgcaacattgtgggagttctcaaaggttttgaccaggcgactaatataattctg
gatgaatctcatgaacgcgtcttttccacaaaggaaggagtacaacaacttgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctagacgaagagctcgat
gctagtctggacttttcgaaactaagagctcatcctttgaaacccgtcgtgcattga

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