Brassica rapa (field mustard): 103852294
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Entry
103852294 CDS
T03449
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103852294
09123 Folding, sorting and degradation
03018 RNA degradation
103852294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103852294
03041 Spliceosome [BR:
brp03041
]
103852294
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103852294
mRNA degradation factors
5'-3' decay
Lsm complex
103852294
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103852294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
M11L
Motif
Other DBs
NCBI-GeneID:
103852294
NCBI-ProteinID:
XP_009127450
UniProt:
M4FF66
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All DBs
Position
A02:complement(8996442..8998610)
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AA seq
98 aa
AA seq
DB search
MATTTGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaactactggacttgagtctcttgtcgatcagatcatttcggttattacaaac
gatggacgcaacattgtgggagttctcaaaggttttgaccaggcgactaatataattctg
gatgaatctcatgaacgcgtcttttccacaaaggaaggagtacaacaacttgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctagacgaagagctcgat
gctagtctggacttttcgaaactaagagctcatcctttgaaacccgtcgtgcattga
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