Brassica rapa (field mustard): 103852731
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Entry
103852731 CDS
T03449
Name
(RefSeq) polyadenylate-binding protein, cytoplasmic and nuclear isoform X1
KO
K13126
polyadenylate-binding protein
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103852731
09123 Folding, sorting and degradation
03018 RNA degradation
103852731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103852731
03041 Spliceosome [BR:
brp03041
]
103852731
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103852731
mRNA cycle factors
Stress granule specific factors
103852731
Spliceosome [BR:
brp03041
]
Complex C
Other components
Complex C specific factors
103852731
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
103852731
NCBI-ProteinID:
XP_033141548
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Position
A02:11874300..11883279
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AA seq
576 aa
AA seq
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MASCSQKANLLGKRKPEDGFGTELVLKKHKEKFEEKETEARVELLSDEANSVQFSVTVET
EPILKGIREEKETAIGFFDEIKGRVELLENEANLISVEGLDEGPEEAAELKKTLFVAHLP
PQTKIRDIIRFFNDVGQVVRVLLQATHKGKCVGEGFVEFASANQAKKALEKKKNEYLHKR
KIFLDVAHKGALCLPPKYCIDHKVWYQEDYLQQESLRIQENPKFSEEATVLFIANLSPQT
TKILHIINFLEDVGDVVSVRLIVNHEGKHVGYGFVEFASANQAKKALENKNGEYLHDHKI
FLMKRRDESPNFSEAVATVRNKTICITHFSGQTKISDIINFFKDVGQVVHVRLIVNPKIK
HVRLGFVEFASANEAEKALEKNGEYLYDRDIFLDFVEEATYTILSRHCVDHKVWYEDYLQ
RESLLIEEHAVAETPDFVEDVNLMKTTVFFATVSMKKENCSMSNIINIFKCVGEVVRVRL
IVDDWGESLGCGFVEFASAEEAKKAVQEKSGCAIYVKVAEKAPYLFRPKCNLADLAEKLW
YEDKLRREGFGLPSKSELRKEEAVFCGKKITFSDKD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggccagttgtagccagaaagctaatttattgggtaagcgaaagccggaagatggtttt
ggaaccgaactggttctgaagaaacataaagaaaaatttgaggagaaggagaccgaagca
agggttgagttgttgtctgatgaggctaattcggtacaattttctgtgacagtggagacc
gaacctattctgaagggaattagggaggagaaggagacagcgataggattttttgatgag
atcaaaggaagggtcgagttgttggagaatgaggctaatttaatctcagtggaaggactt
gatgaaggtcctgaggaagctgccgaacttaaaaagacgctctttgttgctcatctccct
ccccaaactaaaataagagatatcatccgtttcttcaatgatgttggacaagttgttcgt
gttctacttcaagctacccacaagggaaagtgtgtgggcgaaggctttgttgaatttgct
tctgctaaccaagcaaagaaggcactggaaaagaagaagaacgaatatttgcacaaacgc
aagattttcctggatgtggctcataagggagctctatgccttccacccaagtattgcata
gatcacaaggtttggtaccaagaagactatcttcagcaggaaagccttaggatacaagaa
aatcccaagttttcggaggaagctaccgttctctttattgccaatctctctccgcaaaca
actaaaatattacatatcatcaatttcttggaagatgttggagatgttgtcagtgttcga
cttattgtaaaccacgagggtaagcatgtgggttatggctttgttgagtttgcttctgct
aaccaagctaagaaggcactggaaaataagaatggtgaatatttgcacgatcataagatc
tttttgatgaaaagacgtgatgaaagtcccaatttttctgaggcagttgccactgtaaga
aataagacgatctgtattacccatttctctggacaaactaaaatatcagatatcatcaat
tttttcaaagatgttggccaagttgttcatgttcgacttattgtaaaccccaagatcaag
catgtaaggcttggctttgttgagtttgcttctgctaacgaagcagagaaggcgctcgaa
aagaacggcgaatatttgtacgatagagatatttttcttgattttgtcgaggaagctaca
tacactatactatccaggcattgcgtagatcacaaggtttggtatgaagactacctacaa
cgagaaagccttctgatagaagaacatgcagtagcagaaactcccgattttgttgaggat
gttaacttgatgaaaacgacggtcttttttgccacagtctctatgaaaaaagaaaattgt
agcatgtcaaatatcatcaatatcttcaaatgtgttggagaagttgttcgtgttcgactt
atagtagatgactggggtgagtctctgggctgtggctttgttgagtttgcttctgctgag
gaagcgaagaaggctgtgcaagagaagagtggttgtgctatttatgtcaaggtggccgag
aaagctccataccttttccgacccaagtgcaaccttgcagaccttgcggagaagctttgg
tatgaagacaagcttcgacgagaaggctttggtttgccgagcaaatcagagctgaggaaa
gaggaggcagtcttctgcggtaagaagattaccttctctgacaaagactga
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