Brassica rapa (field mustard): 103853216
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Entry
103853216 CDS
T03449
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103853216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103853216
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103853216
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103853216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
103853216
NCBI-ProteinID:
XP_009128391
UniProt:
A0A398AFF7
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Position
A02:complement(15362628..15363940)
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AA seq
274 aa
AA seq
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MSLFLKDDSIQIREVWNDNLLEEMDLIRQVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY
HYETLKLNVNILSIIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFAVDSIDL
LKQSGIDFAKNTQEGIESNRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQDLP
DSQTGFFQLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS
CTFRKLKENFFAGPLQKYAGVLYGLGVENGQVAL
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttctaaaagacgattcgattcaaatccgcgaagtctggaacgataacctc
ctcgaggagatggatctgatccggcaagtcgtcgacgacttcccctacgtcgccatggac
accgagtttcccggaatcgtcgtcagacctgtcggaacattcaaatccaacgccgattac
cactacgaaaccttaaagctcaacgtcaacatcctcagcataatccagctcggtctcacc
ttctccaacgagcaaggtaacctccctacctgtggaaccgacaagtactgcatctggcag
ttcaacttccgagagttcgatctcgattccgacatctttgccgtggattccatcgacctt
cttaagcaatcaggcatcgacttcgcgaaaaacactcaagaagggatcgagtccaacaga
ttcgcggagctgctaatgtcttcagggatcgtgttgaacgagaacgtgcattgggttacg
tttcacagtggatacgattttggatacctgctgaagcttctcacatgccaagaccttccc
gattcgcagacgggcttcttccagctgatcaatgtttattttccgatggtgtacgatatt
aagcacttgatgaagttctgtaacagccttcacggtggtctgaacaagctggcggagttg
ctggaggtggagagagttgggatctgtcaccaggctgggtcggatagtttgctgacctct
tgtactttcagaaagcttaaggagaacttctttgctggtcccttgcagaaatatgctggt
gttttgtatggattaggtgttgaaaatggtcaggttgctctctga
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