Brassica rapa (field mustard): 103853226
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Entry
103853226 CDS
T03449
Name
(RefSeq) protein RAE1
KO
K14298
mRNA export factor
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103853226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103853226
03036 Chromosome and associated proteins [BR:
brp03036
]
103853226
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103853226
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
103853226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_ACSF4
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_RSE1_2nd
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_LRRK2
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
103853226
NCBI-ProteinID:
XP_009128399
UniProt:
A0A398ABW5
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Position
A02:15409632..15412559
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AA seq
346 aa
AA seq
DB search
MATFGATANTNPNKSFEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLA
SAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHDAPIVDMAW
IPGMNLLVTGSWDKTLRYWDTRQQTPVHTQQLPDKCYALSVKHPLMVVGTADRNLIVFNL
QNPQTEFKRIVSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQQNKNFTFKCHRD
GNEIYSVNALNFHPVQGTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSSFNHDGSI
YAYASCYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVTTGRK
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggctacctttggtgcgacggcgaatactaatcctaacaaatcctttgaggttactcca
tcacccgcagattctatctccagcttaagttttagcccaagagccgatattcttgtcgcc
acctcttgggacaatcaggtgcggtgttgggaaatatcccgtagtggagcctctctagca
agtgctcctaaagcatctatatctcatgatcagccggtcttgtgctctgcttggaaagat
gatggaaccactgtctttagtggaggttgtgataagcaagccaaaatgtggcccttgttg
tccggcggtcaacctgttactgttgctatgcacgatgctcctattgttgacatggcctgg
atccctggaatgaatctccttgttactggaagctgggataaaacattgagatattgggac
acaaggcagcaaactcctgtgcatacccaacagcttccagataaatgctatgctttgtct
gtgaaacaccctctgatggttgtcggaactgcagataggaatcttattgtcttcaacttg
caaaatcctcagactgagttcaagagaatcgtgtcaccactgaagtaccagacgaggtgt
gttactgccttccctgatcagcaaggatttttggttggttcaattgaaggacgagttggt
gtccatcatttggatgattctcaacagaacaagaacttcacattcaaatgccacagagat
gggaatgagatctattctgtcaacgctctgaacttccacccggtacaaggaacttttgcc
actgctggctcagatggggctttcaatttctgggacaaggatagtaaacaaagactcaag
gccatgtcaaggtgcagtcagccaattccttgcagttcgtttaaccacgacgggtcgata
tatgcatatgcgtcgtgctatgactggagcaaaggtgcagagaatcacaacccagcaact
gcgaaaagcagcatcttcttgcacctgccacaggaaagtgaggtcaaggcaaagccaaga
gtaacgaccggcaggaaatga
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