KEGG   Brassica rapa (field mustard): 103853257
Entry
103853257         CDS       T03449                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103853257
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103853257
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     103853257
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 DSE1_N Beta-prop_NOL10_N Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_SCAP NBCH_WD40 Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_DCAF12 Beta-prop_Vps41 WD40_RFWD3 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR41 ASA1 Beta-prop_WDR11_1st Beta-prop_RIG_1st Ge1_WD40 Beta-prop_HPS5 CFAP43_N Beta-prop_NUP159_NUP214 TRM82_WD PD40 Tricorn_2nd Beta-prop_ACSF4 CFAP251_N Beta-prop_LRRK2 Beta-prop_pof12
Other DBs
NCBI-GeneID: 103853257
NCBI-ProteinID: XP_009128427
UniProt: M4D3T5
LinkDB
Position
A01:complement(3822453..3823799)
AA seq 321 aa
MKLAGLKSIENAHEDSVWAATWVPATEERPALLLTGSLDETVKLWRADELDLVRTNTGHS
LGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA
GGSSASVKLWDTASWRLISTLSIPRPEAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDG
TICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNVHDAEGKTLVGSMS
GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG
VRAGRLASVSDDKSVSLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgcaggtctgaaatcgatcgagaacgcccacgaagattccgtttgggcggcg
acttgggttccggcgacggaagaacgaccggcgttgcttcttaccggatctctagacgag
acggtgaagctatggagagcggacgagctggatttagtgaggactaacacaggacactcc
ttgggagtagcagctgtggcggcgcatccttccggaatcatcgcagcttcttcttccctc
gatagcttcgtccgtgtcttcgatgtcgacactaatgccaccatcgctgttctcgaagct
cctccttctgaggtttggggtatgcaatttgaacctaagggtacaatccttgctgttgca
ggtggaagtagtgcatcggtcaagctttgggacactgcgagctggagactaatctcaact
ctctcaatcccacgtccagaagcgccaaagccttctgacaaaaccagcagcaagaagttc
gttctctccgtggcttggtctcccaacgggaaacgtctagcttgcggttcgatggatggc
acgatctgcgtctttgatgttgatcgctcgaagcttcttcaccagcttgaaggacacaac
atgcctgtaaggtcccttgtgttctcccctgtagacccgagagtcctcttctcgggatca
gatgatgggcatgtgaacgtgcacgacgcagaagggaaaacgcttgtggggtccatgtcg
gggcacacgagctgggtgctgagcgttgatgctagccctgacggtggagctatagcaacg
gggtcgagtgataggactgtgaggctgtgggatcttaagatgagagcggctattcagaca
atgagcaaccataatgaccaggtttggtctgtcgcgtttagaccacctggtggaaccggt
gtccgtgcgggtcgtctcgctagtgtctctgacgacaagagtgtatcgctctatgattac
tcatga

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