Brassica rapa (field mustard): 103853766
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Entry
103853766 CDS
T03449
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103853766
03015 mRNA surveillance pathway
103853766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103853766
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103853766
5.6.2.5 RNA 5'-3' helicase
103853766
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103853766
mRNA cycle factors
Common to processing body (P body) and stress granule
103853766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
SLFN-g3_helicase
nSTAND3
NPHP3_N
Helicase_RecD
PhoH
ATPase
AAA_16
Viral_helicase1
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
103853766
NCBI-ProteinID:
XP_009128922
LinkDB
All DBs
Position
A02:23165179..23172741
Genome browser
AA seq
1221 aa
AA seq
DB search
MDSQPSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSISAVEPSD
RGGGGVPAADHHSEASSPSSLSAKAGRGGGGGVSSSSQADALAAGIGNLNFEETGDDDGF
DYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVC
LHRDSPLGETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQW
CPLIDDRCFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEP
QPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPK
EENELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFC
VDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQLVRNPLPRRFGVPGLPE
LNASQINAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQL
AEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELS
SSDEKKYKNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLI
PLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPAL
SEFPSNSFYEGTLQNGVTVNERLTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRT
EAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDS
FQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGL
LTHYKEHECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGSRG
RAGGSYMPSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSVGGH
LPHQQATQHNVGTIGPNVNFPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGD
DFKSQGSHVPYNMGDYSTQGGYAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGSNDFMSQ
EYMAHGAQGLFTQAGFIDSSQDDGQQNPFGVNNPNLQSQGLPNSLYSQPFSHYTQPLNLS
GPQQSQPPNQSSQNPKLPHNG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaaccgagcgatctctttgatacggcatctcagcccgatacggcggtggac
gcgtacaccttccttgaattcaattcccaaggcgattcggagttcgatttcccagagttc
cgttcaccgaacgcatggcctacaccgtctgattccatctccgccgtggagccttccgat
cgcggcggcggaggggtacctgccgcggatcaccattccgaggcctcctcgccttcttcc
ctgtctgccaaggccgggcgcggtggtggtggtggtgttagtagcagcagtcaggcggat
gcgttggctgcggggattggaaatttgaacttcgaggagactggcgatgatgatggtttc
gattacggaaagaatgatttcacggagcacgcgtgtaagtattgtggtatctcgaacccg
gcttgcgttgttaggtgtaatgtggcctcctgtagaaagtggttctgcaattcaagggga
aacacctccggctcccacatcgtcaatcatcttgttcgagccaaacacaaggaggtttgt
ctccatagagacagtccgttgggtgaaacaattctcgaatgctacaactgtggatgtcgg
aatgtctttcttctcggtttcatctcagcaactacagacagtgttgtcgtccttctctgt
agagatccttgtttgaatgtgaatgctctcaaggatatgaactgggacctaagccagtgg
tgtcccttgattgacgataggtgtttcctcccctggcttgttaaggttccgtatgagcaa
gagcagctgagggcacgacaaattagtgcacagcaaataaacaaaattgaggaattatgg
aagacaaatccggatgctacccttgaagaccttgaaaaacctggcgtagacgatgaacct
cagcctgttcaacctaagtatgaagatgcttatcagtatcaaaacgtgtttgctcctctt
attaaactcgaagcagattatgacaagatgatgaaagagtctcagagcaaggaaaacctc
acagttcggtgggatattggtctgaacaagaagcgtgttgcctacttcgtcttcccgaag
gaggaaaatgaattgcgattggtgccgggtgatgaactacgtctacgctactcaggagat
gctgctcatccagcttggcaatcagttggacatgtggtcaaactaactgcccaagaggag
gttgctcttgaactccgagctaatcagggagttccgatcgacgtgaaccatggattctgt
gttgattttgtttggaaaagtacaagctttgatcggatgcagggagccatgaaaaatttt
gctgtagatgaaacgagtgtgagtggttatatttaccatcagctattgggacatgaagtt
gaggcccagttggtccggaacccacttcctcgacgttttggggtaccaggtcttccagaa
ctgaatgcatctcagattaatgcggtgaagagtgtccttcagaagcccatcagtttgatc
caaggtccacctggcacaggcaaaactgtgacttctgctgcaattgtgtatcacatggca
aaacagggtcagggacaggttctcgtttgtgccccaagtaatgttgcagtcgaccagcta
gcagaaaaaattagtgctactggtttaaaggttgttcgactttgtgcaaagtcaagggaa
gctgtaagttctcctgttgagcatttgacacttcactaccaggtacgacatcttgacact
tctgagaagagcgagctgcataagctacagcaattgaaagatgaacaaggtgagctgtca
agcagtgatgaaaagaaatacaaaaatttgaaaagagcaacagaacgcgagataacccag
agtgctgatgtcatttgctctacttgtgttggtgctgcggatcttcggctgtcaaatttt
agatttagacaggtccttattgatgagtctactcaatctacagaacctgagtgtcttatt
cctttggtcctcggggtaaaacaggttgttcttgttggtgatcattgtcagcttggcccc
gtcattatgtgcaagaaagcagctcgtgctggcttggcacagtctctctttgaacgcctt
gtgcttcttggcattaaaccaattagattgcaggttcaatatcgtatgcatccagcgttg
tccgagtttccatccaatagcttctatgaaggaacactacagaatggagtcaccgttaat
gaaaggctaacaacagggattgatttcccctggcccgtgcctaatcggcccatgtttttc
tatgtccagctggggcaagaggagatcagtgctagtggaacatcatacctaaatagaacc
gaggctgctaatgtggagaaacttgtgaccgctttcttaaagagtggagttgtccccagt
cagattggagtgataactccatacgagggacagagggcatatattgttaattacatggct
agaaatggttctctccgacaacaactttacaaggaaattgaggttgccagtgttgattct
tttcaaggaagagaaaaagattacatcatattgtcctgtgtcagaagtaacgagcatcag
ggcattggattccttaatgatccacggaggctcaatgttgcactcacacgtgctcgttat
ggaattgttattcttggaaacccgaaggtccttagtaaacagcctctgtggaatggcttg
ctgacacattacaaggaacatgagtgcttagttgagggacctcttaataatttaaagcag
agcatgatacaatttcaaaaaccaagaaagatgtataatgatcgcagaccattttatggt
ggtggggctggcatgattggaaatgataatcccaatgctgacagaagaggcagccgtgga
agggctggtggttcttatatgccttctggcccacctagtggttcgagattacacccagct
ggctacccaatacccagggtgccattttcaccgtttcctggtggtcctccttctcagcca
tatgctattccaactcgtggacctgttggtactggtcgtggaagttcagttgggggccac
cttccccaccaacaagccacccagcataatgttggaactattggccctaatgtgaacttc
ccccttgatagtccaaatagccagccttcacctggtggtccgctatcccaacctggatat
ggaagccaagcattcagggatggttttatgggcggcatttctcaggatttcttaggtgat
gatttcaagagccagggatctcatgttccttacaacatgggcgactattctacacaggga
ggatatgcggttgattatgccacacaaggagcccatggagcttttcctggaaactttatg
aaccaaaattctcaagggggttattctcgtttcagtgggagtaatgatttcatgtcccag
gagtatatggcgcatggagcacaaggtcttttcacccaagctggctttatcgactcatct
caggatgatggacaacagaatccttttggtgtgaacaatcctaatcttcagtctcagggt
ctcccgaattcactctactcgcagcctttctcacactacacccagccactaaacctttca
ggcccacagcaatctcaacctcctaaccaaagctcacaaaacccaaaacttcctcacaac
ggctaa
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