Brassica rapa (field mustard): 103853982
Help
Entry
103853982 CDS
T03449
Name
(RefSeq) probable pectate lyase 6
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103853982
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103853982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103853982
NCBI-ProteinID:
XP_009129128
UniProt:
M4ECS3
LinkDB
All DBs
Position
A02:24823030..24825447
Genome browser
AA seq
457 aa
AA seq
DB search
MAFAYLNLGSYVIVFVSLSIAIVAPSVQAHIAVFDDYWTQRQANALRQTMESYEPNPLNV
TNHFNYHAALAMETTGADNGTRRELGQVKAGQKARGGRFKSLNAIDRCWRGDKNWAKNRK
KLADCVLGFGLKTTGGKNGPIYVVTDASDDDLLSPKPGTLRHAVTRDRPLWIIFARTMVI
KLQQELMITNDKTIDGRGVSVYITGGAGFTLQFVKNVIIHNIHMKFIKRGFGGLIRDSEE
HFGLRTISDGDGINIFGATNIWIDHVSMRNCSDGMIDAIMGSTAITISNSHFTDHKEVML
FGAKNGDEFDKKMQITVAFNHFGKRLNQRMPRVRYGMVHVVNNDYTHWEMYAIGGNMNPT
IISQGNRFIAPPKEDCKQVTKREYTAYPEWKSWNWQSERDYFLNGAYFVQSGKSNAWSAA
PKNPIPKEFTIRPQPGTKVRSLTKDAGTLDCRPGKSC
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcttatttgaaccttgggagctacgttatcgtcttcgtctcattgtctata
gccatcgtagctccatcggttcaagctcacatcgccgtcttcgatgattattggacccag
cgtcaagccaacgcgttgagacaaacaatggaatcttatgaacccaacccgttgaacgtc
acgaaccactttaactaccatgcagcattagcaatggagacgactggtgctgacaacgga
acaaggagagagctcggacaagttaaagccggtcagaaagcacgtggcggaaggttcaaa
tcccttaacgcgattgacagatgctggagaggagacaaaaactgggcgaagaacaggaag
aagctagcggactgcgtcctagggtttggtctgaaaacaaccggaggcaaaaacggaccc
atctacgtagtcacagacgcatcggacgacgatctgttaagccccaaaccaggaactcta
agacacgccgtgactcgcgacagaccactttggatcatatttgctagaaccatggtcata
aaactacaacaagagctgatgataacaaacgataaaaccatcgacggtcgaggagtgagt
gtttatataaccggaggtgcaggattcacgttacagttcgtgaagaatgtgatcatacac
aatattcatatgaagtttattaaaagaggattcggtgggttgattagagactccgaagaa
cattttgggcttagaacaattagtgatggtgacgggatcaatatctttggagctacaaac
atatggatcgatcatgtctccatgaggaactgttctgatggtatgatcgatgccatcatg
ggatcgaccgccattactatctccaattcccatttcaccgaccataaggaggtgatgttg
tttggggctaaaaacggtgacgagttcgacaagaaaatgcagatcacggttgcgtttaac
cattttggtaagagattgaatcaaagaatgccaagggtgagatacggtatggtccatgta
gtgaataatgactacactcactgggaaatgtatgcaattggtggaaacatgaaccctacc
attataagtcaaggcaatcgtttcattgctcctcctaaagaagattgcaaacaggttaca
aagagagagtacacagcgtatccagagtggaagtcatggaactggcaatcagagagagat
tactttttgaatggagcttactttgtgcaatcaggaaagtcaaatgcatggagcgctgca
ccaaaaaatccaatccctaaagagtttacaatccgtcctcagccaggaacaaaggtaaga
agtctcaccaaagatgctggtacgcttgattgcagaccaggaaagtcctgctga
DBGET
integrated database retrieval system
