Brassica rapa (field mustard): 103854217
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Entry
103854217 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
brp03036
]
103854217
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103854217
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Meiosis-specific proteins
Others
103854217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
HHH_5
Cdd1
DNA_pol_lambd_f
IMS_HHH_1
HHH
AAA_22
Motif
Other DBs
NCBI-GeneID:
103854217
NCBI-ProteinID:
XP_009129395
UniProt:
A0A398ALV3
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All DBs
Position
A02:complement(26496824..26503774)
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AA seq
1168 aa
AA seq
DB search
MKLALEYKGQKVTLTPLNLNSLSLSLAFFISLGSLLFNSTLAQIAMDTHTLKSVSDLPPN
FRSAFTFRYFNSLQSECFPLCFHSDINMVISAPTGSGKTVLFELCILRLLSKSISSDGRF
LHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYSSKNIQDADIILT
TPEKFDAVSRYRVSSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRIKILSSNHELR
LSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFL
FEKRLQNYIYDMLMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFVKSREQLE
RLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLSGDIQVLCTTNTLAHGIN
LPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMCGRAGRPPFDDTGLVIIMTRRETVHLYE
NLLNGCEVVESQLLPCLIEHLTAEIVQLTVTDVTRAIEWMKCSYLYVRMKKNPENYAIKK
GIPKDRVEKHLQELCLQKINELSSYQMIWTDTDGFVLKPEEPGRLMTKYYLKFDTMKYII
NAPTGYSLDEALHIVCRAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRI
QTREEKLFVLANDWLTGDPSVHDLSMTQDANSLCSNGSRIARCMKEYFIYKKNYKGTISS
TLLAKSLFQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEALAEADPRRIEIVTGRKY
PFGNHIKESLSSLPPKVEIKVEEVESQKQGVSKLAVTLTRLSQPLVSTKRHYADMIVGSE
EENHIHFHEKIRMDDFSSPYSVTILVERPQQAKVTVKADLIFEEYIGIDLHETLLLKKAN
NNTVNYKSENRLPHYYPPMVDVCVVDDNSPVKSGPPNRKNQKDEMPSFKLIDEDSEEEKE
PYLTMEEDDCVILNEHTVFDHIRQKAKCFPSLITLNPTSSATLKRKSLMKNSPELDPLFQ
YDSVFRSTTTTKDIKQTAQKITTPVYASNGKTERPFSDETVFNYIRKRSKNSPILATSTV
EDHIAISSQERRNTKTSPYTSYGLLPSPAKIPSIKSDAPAEMLSFDISMANSSNTNLEEK
KKGSCSQLAGKSNGSDSFLGFKSIFSFL
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttgccttagagtacaagggtcaaaaagtaactttgactccactgaatttgaat
tcgctctctctctctctagctttcttcatttctctcggatcgttgctcttcaactctact
ctcgcacagatcgccatggatacacacacgcttaaatccgtctccgatttgcctccaaat
tttcgctcagcttttactttcagatacttcaactcgctgcagagcgagtgttttccgctt
tgctttcactccgatatcaacatggttatctcagcccccacgggaagtggcaaaaccgtg
cttttcgagctgtgcatcttgaggcttctctccaagtctatctctagtgatggaaggttt
ctccatgctaaaggagctcttaaaacagtttacatatctccgtccaaggctttggtacag
gagaagctccgtgattggaatcagaagtttaattcatggggaatcagttgtttggagctg
actggtgataacgaaacctacagttcgaagaatatacaagacgctgatattatcttgacc
acacctgagaaatttgatgcagtgagtcgttaccgcgttagcagtggaggcttaggtttt
ttcagcgatatagcgcttgtgctcattgatgaagttcacctgctgaatgatccacgagga
gctgctctggaggcaatagtcagtagaataaaaattctttctagtaatcatgagctaagg
ttaagtactttagcctccgtgcgtcttctggctgtctcagctacaattccaaacattgag
gatctagcggaatggctcaaggttcctactgcaggaattaagaggtttggcgaagaaatg
agacctgttaagttgacaactaaagtttttggatatgctgctgccaaaaatgatttcctc
tttgaaaagcgcctccaaaactatatatatgacatgttaatgcaatactcaaaaggaaaa
tctgccttagttttctgctcgacaagaaagggcgctcaagaggctgcacaaaagcttgct
cagacagcaatgacctatggctactcaaatccatttgttaaaagcagagaacagctggaa
cgattaagggaggcttcgccaatgtgcagtgacaaacaaatgcaatcttatatcctccaa
ggcgttggttatcacaacggtggtctttgccaaaaagaccgcagcctggtagaagggctc
ttccttagtggagatatccaagttctttgcacgaccaacactcttgctcatggaatcaac
ctgcctgcacatacagtcgtcatcaaatcaactcaacatttcaacaaggaaaaaggtcac
tacatggaatatgatcgttccacactactacagatgtgtggcagagctggtcggcctcca
tttgatgacacgggactggttattattatgaccagaagagagacggtccatctatacgaa
aatctcttgaatgggtgcgaggttgttgaatcacaattgctgccatgcttaatagagcac
ctaaccgcagaaatagtccaacttactgtcactgacgttacacgggcaattgagtggatg
aagtgctcatacttgtatgtcagaatgaaaaagaatccagagaactatgctattaagaaa
ggaattcctaaagatcgagtagagaagcatttgcaagagctttgccttcagaagatcaat
gagttgtcaagctatcagatgatatggactgacacagacggttttgttttgaaaccagaa
gagcctggaaggctgatgacaaagtactatctaaagtttgacacaatgaagtatattatt
aatgcgccaacgggctatagcttggacgaggctcttcatattgtatgccgtgctgaagag
atatcttggatacagctcagacgtaatgagaagaagaccttgaatgatgtgaacgcagat
aaagaagggcggctcagattccatatcaacgataataaaggaaagcggaaaaaacgcatc
caaaccagagaagagaaactatttgtgcttgcaaatgattggttgactggggatccttca
gtccatgatttatccatgactcaggacgctaactccttatgctcgaatggatccagaata
gctagatgcatgaaagagtactttatatataaaaagaattataaaggaacgattagctca
actcttcttgccaaatcactctttcaaaagctctgggacgacagtccatatttgctgaaa
caattgcctggcattggaatggttacagcaaaggcacttcattcgatgggggtcaggtca
tttgaagctcttgctgaggctgatccaagaaggatagagattgttaccggtcgaaaatat
ccttttggaaatcatatcaaggaatctctatcttccctacctccaaaagtagaaatcaag
gtcgaggaagttgagagtcagaagcaaggggtatctaaactagcagtcacattgactcga
ctatcacaacctctcgtatccacaaaacgccattatgctgatatgattgttggttcagag
gaagaaaaccatatccactttcatgagaaaataagaatggatgacttctccagtccctat
agcgtcaccatactcgttgaaaggccccaacaggctaaggtgactgtgaaggctgatctc
atctttgaggaatacattggaattgatctccatgaaacacttctactgaagaaggcaaac
aacaacacagtaaattacaaaagtgaaaacaggctgccacactattatcctcccatggtg
gatgtctgcgtagtggatgataacagcccagtaaaatctggacctccaaaccgaaagaat
caaaaagatgagatgcctagtttcaagctcatagatgaagattcagaagaagagaaagag
ccttatttgacgatggaagaagacgactgcgtcattctcaatgaacatacagtgttcgac
cacatacgtcaaaaagcaaagtgtttcccatcattgatcactttgaatccaacctcttcg
gcaactctgaaaaggaagagcttaatgaagaattctcctgaactcgatccgctatttcag
tatgattctgtgtttcgctcaaccacaactactaaagacatcaaacaaaccgcacagaaa
attacaaccccggtttatgcaagcaatgggaaaacagagagaccattctcagatgaaaca
gtattcaactacataaggaaaaggtccaagaactctcccatactcgccacatcaacagtt
gaggatcatatagccatctcttctcaagaacgaagaaacacaaagacaagtccctataca
tcatacgggttattgcctagtcctgctaaaataccaagcatcaaatctgatgcacctgca
gaaatgctgtcgtttgatatctcaatggcaaatagtagcaacaccaacttagaggagaag
aagaaaggatcctgctcccaacttgcaggtaagtccaatggttctgattcttttcttgga
tttaaaagcatcttctcttttctgtga
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