Brassica rapa (field mustard): 103854733
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Entry
103854733 CDS
T03449
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103854733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103854733
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
RNases
103854733
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Cob_adeno_trans
Motif
Other DBs
NCBI-GeneID:
103854733
NCBI-ProteinID:
XP_009129944
LinkDB
All DBs
Position
A2
Genome browser
AA seq
567 aa
AA seq
DB search
MSSLKRKRDAVEDNLDGGESAEGSDKSNGFFDIYGPQAKPELVFNTPDITLNLQDVQGLV
TWVLGEGYMPSWVFIKNKPLIPKVVLLYLPGLDAALYLSQSKELARLKSCCGNPIPLLAL
RLVCAVDEMKTIDTILTCRGKKKKTTTGLVESKPEACNLTGQSFVELTKDIPFPVAYYTL
SRKEMEQNGYKFETEFIATLPAPSGSCPHEILALDCEMCITKDGFELTRVTLVDIEGQVL
LDKLVKPTNLITDYNTRYSGITAEMMEGVTTTIRDIQEEFLKLVYKETVLVGHSLENDLV
SLKISHNLVIDTAVLYKHPRGGSYKTKLRILAKKFLAREIQMSESGHDSVEDAKAAMDLA
LMKIKYGPDFGSPPEMIRKRLLNVLNESGKATSIVDNINIVKRYASDSSNAIPVSDDDEA
LSKAMKEVKNMRSQFVWTQFSELNTHFQSRADDPEKLNPRLAKMISLLTCSHDSAPEKHP
MSKVSAETKEILKKMDERVHALHAALPPNAMFIVCTGHGDTAIVHRVRKMLRDEKSEIGF
SREKTVKVLEELQAQAEVALCFVGIKQ
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctttgaagcggaagcgcgacgccgtggaagataatcttgatggtggagaaagc
gccgagggtagtgataagagcaacggtttcttcgatatatacggacctcaagcaaaacca
gaactcgttttcaacactccggacataacattgaacttacaagatgttcagggacttgtg
acatgggttcttggagaaggctacatgccctcgtgggtattcatcaagaataagcctcta
attccaaaggttgtcttgctctacctccctggattggatgcagctttgtacttatcacag
tctaaagaacttgctaggttgaaatcatgttgtggcaatcctataccgcttttagctttg
aggttggtctgtgcagttgatgagatgaagacaatcgatacaatacttacttgcaggggt
aagaagaagaaaaccactactggtctagtggaatctaagccagaagcatgtaatctgacg
gggcagtccttcgttgagctcacaaaagatataccattcccagttgcatactacactcta
agtagaaaggaaatggaacaaaacggatataaatttgagacagagtttattgctacactt
cctgcaccatcaggatcatgtcctcatgaaattttggctcttgattgcgagatgtgtatt
acaaaggatggatttgaattgacaagagtgacactggttgatatagaaggacaggttcta
ctcgataagttagtcaagccaacaaatcttattactgattacaatacaaggtatagcgga
ataacagctgagatgatggagggagttacaacaactattagagacattcaggaagagttc
ttaaagctggtttataaagagacagtactagtaggacactctttggagaatgacttggtt
tctctgaagatctctcataacctggtgattgacactgcagtactatacaagcatccacgg
ggtggttcttataaaaccaaacttcggattctagcgaaaaagttcctagctagagagata
cagatgtctgaatcaggacatgacagcgtcgaggatgcaaaggcagccatggatttggca
ttaatgaagataaaatatggacctgacttcggttcaccaccggagatgataagaaagaga
ctcctcaacgttttgaatgagagcgggaaagccacttctattgtcgacaacatcaacatc
gtgaaacgatatgcttccgactcatcaaatgcaattccagtatctgatgatgatgaagca
ctttcaaaggccatgaaagaggtaaagaacatgcggtcacagttcgtttggacacagttc
tcggaactaaacacacatttccagagcagagcggatgatccagagaaactgaacccaaga
ctagcaaaaatgatctcattactgacatgtagccatgattcagcccctgagaagcatccc
atgagcaaagtttcagctgaaacgaaagagatattaaagaaaatggatgaaagagtgcat
gcccttcacgctgcattaccaccaaacgcaatgtttatagtttgcaccggacatggagac
acagccattgtacacagagtgaggaagatgctgagagacgagaagagtgagattgggttt
agccgtgagaaaactgtcaaggttcttgaagagcttcaagcgcaagctgaagtagctctc
tgttttgtaggtatcaagcaatga
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