Brassica rapa (field mustard): 103854775
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Entry
103854775 CDS
T03449
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103854775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103854775
03036 Chromosome and associated proteins [BR:
brp03036
]
103854775
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103854775
Coactivators
SAGA/TFTC/STAGA complex
103854775
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103854775
STAGA complex
103854775
TFTC complex
103854775
SAGA complex
103854775
SLIK complex
103854775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
eIF2A
RAB3GAP2_N
WD40_like
LisH
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
103854775
NCBI-ProteinID:
XP_009129987
UniProt:
A0A3P6AG14
M4DVE1
LinkDB
All DBs
Position
A02:complement(28999949..29005045)
Genome browser
AA seq
666 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKHLQESLHNNNGSTFSSIDYHNDPELNKLIRSFSQSE
NDPSRYREGYSKLRSWGYNSLDLYKHELVRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
KDHEMVHLRDLQKLGGVLAPSHLQEMEFARSLRQSKINIKICQYSYDLLLQYLHRTESTL
MLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFHETADHVNQKEIHWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKAGDMDDSKKRSAEIGKQGSSIKKLKKDKAGTATTKVARQETST
VLSSMPRVKPELAMPVMSADVEESILEDLRNRVQLSSIAMPSVSFYTFVNTHNGLNSSSI
SHDGSLVAGGFSDSSIKVWDMAKIGQAGSCALQDENNQTVGLNGRRNYTLLVGHSGPVYS
ATFSPPGDYVLSSSADTTIRLWSTKLNANLVCYKGHNHTVWDAQFSPFGHYFASCSHDRT
ARIWSMDRMQPLRMMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWTLSYSGEGSLLAS
GSADCTVKLWDVSSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGA
ISKPSS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtcatgggctacttgaagaagaaaggcttcaac
agcgctgctaaacatctccaagaatctcttcacaataacaatggcagcaccttcagctct
atcgattatcacaacgaccctgagctcaacaagctcatccgctccttttcccaatcagag
aatgatccatctcggtaccgtgaaggttacagcaagctaaggtcatggggttataactca
ctggatctttataagcatgagttggttcgagtgatgtatcctgtgtttattcattgttac
atggatctagtggggaaagggcacactcaagaagcgagatccttctttaacagcttccgc
aaggatcatgaaatggtacatctacgggatcttcagaagctgggaggcgttcttgctcca
tctcatctacaggaaatggagtttgctcgttctcttagacaaagcaagatcaacatcaaa
atttgtcagtattcgtatgatttattgcttcagtacctacatagaacagagtctactcta
atgcttggtattatcaacgagcacatcaatttccaagtctactcaggacagcctaactcc
gcatctgatgacatagaagctgtcaccattgttgggagttttcatgagacagctgatcac
gtcaatcaaaaagaaatacactggggattgcttgaggactcgctggaagatcgcctggag
aagacgggaggtctactgtctgattccgagaagggacaaggagaaagtaaagctggggat
atggatgatagtaagaaaagatccgccgaaattggaaagcaaggctcttccataaagaag
ttaaagaaggacaaagcaggaactgcaacaacaaaagttgcacgtcaggagaccagcacg
gtgttgtcgtcgatgccacgtgtgaaaccggaactcgccatgccagtaatgtctgcggat
gtagaggaatcgatccttgaagacctgagaaaccgtgtgcagttgagtagcatcgcaatg
ccgtctgtcagcttttacacatttgttaatactcataacgggttaaacagttcatctata
tctcatgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggac
atggcgaagataggacaagctggcagttgtgcgttgcaggatgaaaataatcaaaccgtt
ggactaaatggcagaagaaattatacattattagtgggacactcagggccagtttactcg
gccactttcagtcctccaggagattatgttttatcttcttcagcagatacaacaataagg
ctgtggagcacaaaattaaatgccaatcttgtgtgttacaagggtcataatcacactgta
tgggatgcccagtttagcccttttgggcattactttgcaagctgttctcatgatcgtact
gcgcggatttggtcaatggatagaatgcaacctctgcggatgatggcagggcatctctct
gatgttgattgtgtacagtggcatcctaattgtaactacattgcaaccggttctagtgat
aagacggtgagactctgggatgtacaaacaggggaatgtgtcaggatattcattggacac
aggagcatggttttgtcattggcgatgtcaccagatgggagatatatggcctctggtgat
gaagatggaaccataatgatgtgggacctctcaacagctcgctgcatcacacctctcatg
ggccataactcatgtgtctggactctctcttacagcggtgagggctctcttctggcttct
ggatctgcggactgcacagtgaaactgtgggacgtctcctcaagtaccaaattgacaaag
gccgaagaaaaaaatgggaactcaaacagactgcgatcactcagaactttccccactaag
tccacacctgttcacgctctccgattttctcggagaaacctgctgtttgctgcaggagcg
atctctaaaccctcaagctga
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