Brassica rapa (field mustard): 103855501
Help
Entry
103855501 CDS
T03449
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103855501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103855501
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
103855501
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
HECT type E3
103855501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
103855501
NCBI-ProteinID:
XP_018513489
LinkDB
All DBs
Position
A03:complement(424542..432418)
Genome browser
AA seq
1550 aa
AA seq
DB search
MENRGQKRMEDVEELPADKRACNSQDSRSSSSGGSSVQSQSQEAANGASSGHETTDADMD
TSSSDSPSSHSDGEPDKEEEEEEDYGSCDSDDDDEEGEDPRHKALQDVQWGRSSEDQQKL
SSLVTRLSEEVDPSLQLTGLTELCEVLSFCTEDSLSTVMADTLSRVLVKLANHESNADIM
LLAIRAVTYLSDVYPRSVAFLVKHETLPALCQRLQAIEYLDVAEQCLQALEKISKDEPVA
CLNAGAIKAVLSYIDFFSTSLQRVAVSTVVNICRKLSSESPSPFMDAVPILCNLLQYEDR
QLVENVAICLTKIADQVSESPEMLDQLSSHGLIHQSIHLLNLNGRTTLSQPVYNGVIGLL
RKLSSGSILAFRTLYELNIGYRLKEIISTYDISHSVSSTHPNNTCSNQVHEVLKLVIELL
PSSPVEDNQLALEKESFLVNQPDLLQQFGADILPVMIQVLKSGANVYVFYGCLSAIHKLT
CLSKSVDFVDLLKNANILSVLAGILSRKVHHVVVVALQIAEALLGKYSDDFLNSFIKEGV
YFAIEALLNSGQQNQGSADGSEEHVPKETVKCLCQSFERSSSSSSQTCKIEKDSVYILAT
RIKESFFGPEVFDSQKGLTDVLQNLKHLSAALDDLMTEPIDAHALHDEKFFSVWSQIMER
LNGRESVSTFEFTESGVVKALTNYLSNRLHQRKFSKGDSECDSLPFVGNRFEVFTRSLWS
DGEATSSVLIKNLQNSLSSLENYPIVLSQFLKQRNSFATVPNGRSISYPILRVRFVKAEG
ETCLRDYSQDLVTVDPLCFLDAVDQYMWPKVQLEPLYSVEEKDQAMECPSSQLESTSISC
QGESSTHMEIDSPNASQLQGSQEEDQEQLPDSGEDNTSSSEEEDALPEEDALPRLLFRLE
GLELDRSLTVYQAILLHKLKSGSETTNDSKLSGSHTITYERAPQLAESDENLFPLGFMDN
DEYHPFLSFLFAQRLDLRHKATNPPAYDMLFLLKSLEGMNRFLFHLICHERINAFGEGRL
ENLDDLRVQLRPVPYAEFVSSKLTEKLEQQLRDSFAVSTCGLPPWFNDLMGSCPFLFSFE
VKTKYFRLAAFGSQKVHHHPQHLSSEGRPVTGSLPRKKFLACRETILESASKMMELHGNQ
KVVIEVEYSEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRCDRSSFAGKPKEDSGFLVAPS
GLFPRPWSDTSAAFPDVLQKFVLLGTVVAKALHDGRVLDIPFSKAFYKLIIGQELSSFDI
HFIDPELCKTLVELQALTRRKKVFSESQTDARAAKCDLSFRGTNIEDLCLEFVLPGYTDY
VLALHSANDMVNLDNLEEYIKAIVNATICNGIQKQVEAFRSGFNKVFPIEHLGIFNEEEL
ETLLCGERDLFNMNEVLDHIKFDHGYTSSSPPVENLLEILHEFDKDQQRAFLQFVTGCPR
LPPGGLASLNPKLTIVRKRGSDSSETDLPSVMTCANYLKLPPYSSKVISLSSSFVNPLSF
LLMLTKTGLRKDLTVLWFCFVFCLVCVLQEKMKEKLIYAITEGQGSFHLS
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagggggcagaaacgaatggaggatgtggaggagctacctgctgataagaga
gcttgtaactcacaggactctaggtcaagctcatctggtggctcgtctgttcagagccag
tctcaagaagcagccaatggagcgagctcgggacacgaaaccactgacgctgatatggac
acttcttcatcagattctccttctagtcattcagatggagagccagacaaggaggaggag
gaggaggaggactacggatcttgcgattctgatgatgatgatgaagaaggtgaagatccg
aggcacaaggcgcttcaggatgttcagtgggggagatcgtctgaggatcagcagaagttg
agttctcttgtgacgagattgagtgaagaagtcgatccttctttgcagttgactggtctt
acggagctgtgtgaggtcttgtctttctgtactgaagattcgctgtccaccgttatggcc
gatacgctttcccgggtgcttgttaagttggctaatcatgagagcaatgcagatattatg
ctgcttgctatcagagcggttacttacttgtctgatgtttatccgcggtctgtagcattc
cttgtgaaacatgagactctccctgctctttgccagagactacaggcaattgagtacttg
gacgttgctgagcagtgtttgcaagcacttgagaaaatatccaaagatgagccagtggcg
tgcttgaatgctggagcaattaaggcagtgctttcgtatattgatttcttctcaactagc
ttacagagagtcgcagtttctactgtggtgaatatatgtaggaagctttcatctgagtct
ccctccccttttatggatgctgttccaattttatgcaatcttcttcagtatgaagatcga
cagttggtggaaaatgtggctatttgcttaacaaaaatagcagatcaagttagcgagtca
cctgaaatgttggatcaactatctagccatggtctgattcatcaatccatacatctttta
aacttgaatggccgcaccaccctatctcaacctgtttacaatggtgtgattggattgcta
agaaaactatcttctggttcaattttagccttcagaacgttatatgaacttaacattggc
tacagactaaaagaaattatatccacgtatgacatttcccattcagtgtcttctacacat
cccaacaatacatgttccaaccaggtgcatgaagtcctgaagttggtgattgagcttctt
ccatcttcgcctgtagaggataatcagctggcattggaaaaggaaagttttcttgttaat
cagcccgatctcttgcaacaatttggagcagacatacttcctgttatgattcaggtgcta
aaatctggagcgaacgtatatgttttttatggttgcctatcagcaatccacaagctgact
tgcttgagtaagtcagtcgattttgtcgatttactgaagaatgcaaacattttaagtgtt
ttggcgggcattttgtcaaggaaagttcatcatgtggttgttgtagcactacagattgct
gaagcgcttcttgggaaatacagtgatgattttttgaattcgtttataaaggagggtgtt
tatttcgcaattgaagcgcttttaaactcggggcaacagaatcaaggatcagctgacggt
tcagaagagcatgttccgaaagagactgtgaaatgcttgtgccagtcttttgaaagatcg
agttcctcttcttcacaaacttgtaagatcgagaaggattctgtctacattctcgcaaca
cgtatcaaggagagtttctttggacctgaggtattcgactctcagaaaggcttgacagat
gttctccagaacctcaagcacttgtctgcagcacttgacgatttgatgactgaacctatt
gatgcacatgccctgcacgatgagaagttcttctcagtatggagccaaatcatggaaagg
ctgaatggaagggaatctgtgtccacatttgaatttacagagagtggagttgtgaaggca
ctgacaaattacctgtctaatagactccaccaaaggaaatttagcaaaggcgattcagaa
tgtgatagtttgccatttgttggtaacagatttgaagtgttcacaagatcactttggtct
gatggcgaggcaacttcatccgtattaataaagaatctccaaaattccttatcttcatta
gagaactacccaattgtcctaagccagtttttgaagcaaaggaactcattcgcgactgtt
cccaatggacgtagcataagctatccaatcctaagagttcgttttgtcaaagcagagggg
gagacttgcttgcgtgattactcccaagacttggtcaccgttgacccactttgcttcttg
gatgctgtcgatcaatacatgtggcctaaagtgcagttagaacctttatattccgttgaa
gaaaaagatcaagctatggaatgtccatcttctcagctggagtcaacttctatatcttgt
caaggtgaaagctcaacccatatggagattgacagtcctaacgcatctcagttgcaggga
tctcaagaggaagaccaagagcagcttccagattcaggggaagataatacttcctcatct
gaagaggaggatgcgttacctgaggaggatgcgttacctagacttttgtttcgtctagaa
gggcttgaactagaccgctctttgactgtataccaggctattctcttgcacaaactaaaa
tcaggaagtgaaactaccaacgattccaagctgagtggatcccacaccatcacgtatgaa
agggccccacaacttgcagagtctgatgaaaatctgtttcctctcggatttatggacaat
gacgagtatcacccgtttttatccttcttgtttgctcaaagacttgatttgcgccacaaa
gcaacaaatcctcctgcgtacgacatgttgtttctgctcaagagtctggagggcatgaac
agatttctctttcacctgatttgtcatgaacggataaatgcttttggggaaggtaggctg
gagaatttggatgatctgagggtgcagcttcgtcctgtgccatatgctgaatttgttagt
agtaagctaacagagaagctggagcagcagctgcgtgattcctttgctgtgtcaacctgc
ggtctaccaccgtggtttaatgatctaatgggttcatgcccttttctgtttagttttgaa
gtcaaaaccaaatacttccggctagcagcattcggttcgcagaaagtccatcatcatcca
caacaccttagcagtgaagggcgcccagtaactggtagtttacctcgcaaaaagttctta
gcttgccgtgaaaccattctagagtctgcttcaaaaatgatggagttgcacggcaaccag
aaggtggtaattgaggttgagtacagtgaagaagtgggaactggtcttgggccaacgctg
gagttctacacacttgtcagtagagcgtttcaaaatccagaccttggcatgtggaggtgt
gatcgtagttcctttgctggaaaaccaaaggaagactcaggatttttggtggctccttcg
ggactctttccacgaccttggtcagatacatcagctgctttcccagatgtgctacagaaa
tttgtgctcttagggacagtggtagcaaaggctctacatgatggacgagttttggacatt
cctttctccaaagccttctataaactgattatcggacaggagttgagttcatttgacatc
cacttcattgaccctgaactttgtaaaacactggtggaattgcaagctctgacacgtagg
aaaaaggttttctcagaatcacaaactgatgcccgagcagccaagtgtgatttgagtttc
cgtggaacaaatattgaggatctttgtcttgaatttgtgctgcctggctacacagactat
gttctcgctcttcattctgctaatgatatggtaaatttggataacctcgaggagtatatc
aaggctattgtcaatgcaacaatatgtaacgggatccaaaaacaagtggaagcatttcgg
tctggatttaacaaagttttccctattgaacatcttgggatattcaatgaagaagaactg
gaaactctcttgtgtggagaacgagatctctttaatatgaatgaagtcttggatcacatc
aagtttgatcatggatatacttctagcagcccaccagttgaaaatttgttggagattctg
catgagtttgacaaggatcaacaacgagcctttctgcagtttgtaacaggatgtcctcgt
ctacctcctgggggcttggcgtctctcaatcccaaactaacaattgtccgcaagcgtggt
agcgattcttcagaaactgacttgccgagtgtgatgacatgcgctaattatctaaagctt
ccaccttactcttccaaagtgatatctctctcttcatcttttgttaacccactctctttc
ttactcatgttgacaaaaaccggtctcaggaaagatctaactgtgttgtggttctgcttt
gtgttctgtcttgtctgtgttttgcaggaaaagatgaaggagaagctaatttatgctata
actgaaggccaaggttccttccatctctcttaa
DBGET
integrated database retrieval system
