Brassica rapa (field mustard): 103855752
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Entry
103855752 CDS
T03449
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03030
DNA replication
brp03420
Nucleotide excision repair
brp03430
Mismatch repair
brp03440
Homologous recombination
brp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103855752
03420 Nucleotide excision repair
103855752
03430 Mismatch repair
103855752
03440 Homologous recombination
103855752
03460 Fanconi anemia pathway
103855752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
brp03000
]
103855752
03032 DNA replication proteins [BR:
brp03032
]
103855752
03400 DNA repair and recombination proteins [BR:
brp03400
]
103855752
Transcription factors [BR:
brp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103855752
DNA replication proteins [BR:
brp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103855752
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103855752
MMR (mismatch excision repair)
103855752
DSBR (double strand breaks repair)
HR (homologous recombination)
103855752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
103855752
NCBI-ProteinID:
XP_009131026
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All DBs
Position
A03:1439551..1442986
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AA seq
600 aa
AA seq
DB search
MENSVTQDGIASVLSLDSSSVQPQIVVQLVDLKPVGNRYTFNANDGKTKIKAMLPATLTS
EIVSGKIQNLGLIQLLDYTPNDIPGKSGEKYLLVTKCEAVASALDSEIKTKASTGIMLKP
KQEFVAKSASQIINEQRGNAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGILRTY
KNARGEGCVFNVELTDEEGTQIQATMFNAAAKKFYDTFQKGKVYYISRGSLKLANKQFKT
VQNDYEMTLNEYSEVEEAGSEEMFIPETKFNFVPIDELGPYVNQKELVDVIGVVQSVSPT
MSIRRKSDNEMIPKRDIVLADETKKTVVVSLWNDLATDLGQELLDMADKYPVIAIKSLKV
GDFQGVSLSTISKSDVVVNPDIPEATKLKSWYDSEGKEMSMSAIGSGMSPSANNGSRSMY
SDRVCLSHFTTNPSLGEDKPVFFSTRAYISFIKPDQAMWYRACKTCNKKVTEAMDSGYWC
EGCQKKDEECSLRYIMAVKVSDSTGEAWFSXFNDEAEKMIGCTADELNVLKSEEGEANEF
QTKLKEATWSAHLFRVSVSQQEYNSEKRQRITVRGVAPVDFAAETRLLLQDISKNNKTSQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcagtgacccaagatggtatcgcgtcagtattatccctcgattcctcctcg
gttcaacctcagatcgtcgtccaactcgtggatcttaaacccgttggaaatcgatacacg
tttaatgctaatgatggaaagaccaagatcaaagcaatgttgcctgcgactttaacatct
gagatcgtctctggaaaaatccagaatcttggtctgattcagctccttgattataccccc
aacgatattccaggcaaatctggagaaaaatatttgcttgtgacaaaatgcgaggctgtt
gcgtctgcacttgactcagagataaagactaaagcttctacgggtataatgctgaaaccg
aagcaggagtttgtcgccaagtcagcttcacagataatcaatgagcagaggggaaacgct
gcaccagctgcaagaatggctatgaccaggagggtccatccccttgtgtccttgaaccct
taccaaggaagttggactattaaagtccgtgtcacaaacaaaggaatcttgagaacttac
aaaaacgctaggggagaaggatgtgtcttcaatgtggaactcactgacgaggaaggaacg
cagattcaggcgacgatgtttaacgcagctgcaaagaagttttacgacacattccagaag
ggaaaggtctattacatatcgagaggatcacttaagcttgctaacaagcagttcaagacg
gttcagaacgattatgagatgactctgaatgagtactcagaggttgaagaagctgggagt
gaagaaatgtttatccccgagacaaaattcaactttgtacccattgatgagttgggtcca
tacgtgaatcagaaggagcttgttgatgttatcggtgttgtccaaagcgtttctccaacc
atgagcattagaagaaagagtgacaatgagatgatcccaaagagggatatagttttagct
gatgagacgaagaaaaccgttgtggtgtccctttggaacgatctagctactgacttagga
caagagcttctagacatggctgataagtaccctgttattgcgatcaagtctctcaaagtt
ggagattttcaaggtgtttcactctccactatcagcaaaagcgacgtggtggtaaatcct
gatataccagaagctacaaagttgaaatcttggtatgactctgaaggtaaagagatgtct
atgtctgctattggctctgggatgagcccttctgccaataatggatcaagatccatgtat
tctgacagagtctgtctctctcacttcacaaccaacccctctttaggcgaggacaagcct
gtattcttcagtactagagcttacataagcttcatcaagccggaccaggcaatgtggtac
cgtgcttgcaagacatgcaacaagaaagtgactgaagcgatggactctggttattggtgt
gaaggttgtcagaaaaaggatgaagagtgcagtttaaggtacataatggcggtgaaagtc
tctgattcaactggtgaagcctggttctctngattcaacgatgaagcagagaaaatgatt
ggatgcacagctgatgaactcaatgttctaaaatcagaggaaggtgaagcgaatgagttt
cagacaaaactgaaagaggctacgtggtcagctcatctcttccgtgttagtgtttctcaa
caagagtataacagtgagaagagacagaggataactgtaagaggtgttgctccggttgat
tttgctgctgagacaagattattgctccaagacatttccaagaacaacaagacatctcaa
taa
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