Brassica rapa (field mustard): 103855879
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Entry
103855879 CDS
T03449
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103855879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103855879
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103855879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
RUBY_RBDX
Motif
Other DBs
NCBI-GeneID:
103855879
NCBI-ProteinID:
XP_009131172
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All DBs
Position
A03:1875542..1878991
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AA seq
646 aa
AA seq
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MINSQAEKLEGALQQTMPRKGFSNFDDYDDGFDDDDAYDYDYDDDDEHEESEQKEVEIAQ
QGVWRCGICTYDNDESMNVCDICGAIRHDTVAGGNQTIINNNTSSMKQKERQDTSVHNPL
KKERDRSETSSQGRHAHIGGVKSSKSLPKAKADTSHETTSSSKNMEASESLTSTMNKMSL
TGETETSRDIKTRSARSKSNHKPEEWMLLDKESDTLTQLNLAIVGHVDSGKSTLSGRLLH
LLGRISQKQMHKFEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVL
LDSPGHKDFVPNMIAGATQADAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQV
IVAVNKMDIVGYSKERFDLIKQHVGSFLQSCRFKESSLTWVPLSAMENQNLVSAPSESRL
SSWYQGPCLLDAVDSVNSPGRDVSKPLLMPLCDVVKSNSHGQVSACGKLEAGAVRSGSKI
MVMPSGEQGTVRSLERDSQGCTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATH
LELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQS
AMLEVSLHYPVCVETFSESRALGRVFLRSSGRTVAMGKITRIIQDS
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatcaattcgcaggcggagaagctggaaggagctttgcaacaaacgatgcctcgtaaa
ggattctccaatttcgatgattacgatgatggtttcgacgatgacgatgcgtatgattat
gactatgatgatgatgatgaacatgaagaatctgaacagaaggaagtagaaattgctcag
caaggggtttggagatgtggaatctgtacatatgacaatgatgagagtatgaatgtgtgt
gatatttgcggtgctattcgtcatgatacagtggctggtggaaaccaaactatcattaac
aacaatacatcaagcatgaagcagaaagagaggcaagatacgtcagtacataaccctcta
aagaaagaaagagatagatcagaaactagctcccaaggcagacacgctcatattggcggc
gtaaaatctagcaaaagtttgccaaaagcaaaagcagatacgtctcatgagacaacttct
tcctcaaaaaatatggaggcgtcagagagtcttactagtactatgaacaagatgtctttg
actggggaaacagaaacctccagagatattaaaaccagaagcgcaagatcaaaatcaaac
cataagccagaggagtggatgcttcttgataaagaatcagatacactaactcaacttaat
ctcgccatcgttggacatgttgattcaggcaaatcaacgctttcaggtagactactgcat
ctactaggaagaatctctcaaaagcaaatgcacaagtttgagaaagaagcaaagctgcag
ggcaaggggtcctttgcatatgcctgggcattggacgagagtgctgaagagagggaaaga
gggatcacaatgacagtggcggttgcttacttcaacaccaaacgacaccatgttgttttg
ctagactctcctggacacaaagactttgttcccaacatgatagcaggagcaacgcaagca
gatgctgctattctcgttgtggatgcatccatcggtgcttttgaagctggttttgataat
ttgaaaggccagacaagggagcatgcgcgtgttcttagaggctttggcgtggagcaagtc
atagttgcggttaacaaaatggatattgttgggtattccaaggagaggtttgatttgatt
aagcagcatgttggatcttttctgcagtcgtgtcggtttaaagagtcgtctctgacgtgg
gttcctttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagccgccta
tcctcatggtaccaaggtccatgtttattggatgccgttgactctgttaactctcctggt
agagacgtctcaaagcctctgctaatgcctctatgtgacgttgtgaaatcaaactcacat
gggcaggtgtctgcctgtggcaaacttgaagctggagctgttcgttcaggatccaagata
atggttatgccatcaggagagcaaggaaccgtgcggtctctggagcgtgactctcagggt
tgcaccatcgcaagagctggagataacgtagcaatagctttgcaagggatcgatgcaaat
caagtgatggcaggaggtgtgctgtgccatcctgattacccggtttcagtagcaactcat
ttggagttgatggtgctcgtcttggaaggtgcaacaccgatcttgctcggttctcagttg
gagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggcaatgctt
gatccgaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaacaaagt
gcaatgcttgaggtgagtcttcattatccagtttgtgtggagacattttctgaaagtaga
gctcttgggagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaaataact
cggatcatccaagactcttaa
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