Brassica rapa (field mustard): 103855903
Help
Entry
103855903 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103855903
09122 Translation
03013 Nucleocytoplasmic transport
103855903
03015 mRNA surveillance pathway
103855903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103855903
03041 Spliceosome [BR:
brp03041
]
103855903
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103855903
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103855903
Spliceosome [BR:
brp03041
]
Complex C
Other components
EJC/TREX
103855903
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103855903
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
103855903
NCBI-ProteinID:
XP_009131197
LinkDB
All DBs
Position
A03:complement(1971657..1975433)
Genome browser
AA seq
458 aa
AA seq
DB search
MRRRALNCFPSNRNRDPTKSASLSACRICFTMGDARDNEAYEEELLDYEEEDEKVLDSGN
KVNGDAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQ
AKSGMGKTAVFVLSTLQQIEPTPGQVSALILCHTRELAYQICNEFVRFSTYLPDTKVSVF
YGGVNNKIHKELLKNECPHIVVGTPGRVLGLARDKDLSLKNVRHFILDECDKMLESLDMR
RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK
LSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAGELNKLLIECNFPSICIHSGMSQEERLT
HYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI
TFVASASDSEVLNQVQDRFEVDIKELPEQIDTSTYMPS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgtagggcattaaattgttttccgtcaaatcgaaatcgagatccaaccaaatct
gcttctctctcagcttgtagaatttgctttactatgggagacgctagggacaacgaagcc
tatgaggaggagctccttgattatgaggaagaggacgagaaggttctcgattctgggaat
aaagttaacggcgacgctgtgaagaaaggttacgttgggatacacagttcaggattcaga
gacttccttttgaagccggagcttctccgagctattgttgactctggatttgagcatcca
tctgaagtgcaacatgaatgtatccctcaagctatcttgggcatggatgttatctgccaa
gctaaatctggtatgggaaagactgctgtgtttgtgctctcgactctacaacagatcgag
cctactcctggccaggtgtctgcacttatcctgtgccatacaagagagttagcttaccag
atctgcaatgagttcgtgcgattcagtacctacctgcctgatacgaaggtttcagtgttc
tatggaggagtcaacaacaaaattcacaaagaattgctgaagaatgaatgtcctcacatt
gttgttggaacacctggtcgggttcttggactcgccagggacaaagatctctctttgaag
aatgtgaggcattttattctcgacgagtgtgataaaatgctcgagtcactagacatgcgg
agggatgtgcaggagattttcaagatgactcctcacgacaaacaagttatgatgttctca
gcaacgctcagcaaagagatacgccctgtctgcaagaaatttatgcaagatccaatggag
atttatgttgatgatgaagcgaaattgactcttcatggacttgtccagcactacatcaaa
ctgagcgagatggagaaaaaccgcaagttgaatgaccttctcgatgcattggacttcaat
caagttgttatctttgtgaagagcgttagcagagctggggagctgaacaagttgcttatc
gaatgcaatttcccctcgatatgcattcactctggcatgtctcaggaagagaggctgact
cactacaaaagtttcaaggaagggcacaagagaattctggtggcgacagacttggtaggg
agaggaattgacattgagcgtgtgaacattgtcatcaactacgacatgccagattctgct
gatacttatcttcacagggttggtagagctggaaggtttggaacaaagggtcttgcaata
acattcgtggcatcagcttctgattcggaagttctcaaccaggtacaagataggtttgag
gttgatataaaggaacttcctgagcagattgatacgtccacttacatgccgtcctaa
DBGET
integrated database retrieval system
