Brassica rapa (field mustard): 103856075
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Entry
103856075 CDS
T03449
Name
(RefSeq) phytochrome E
KO
K12123
phytochrome E
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
103856075
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
PAS_4
HATPase_c
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
103856075
NCBI-ProteinID:
XP_009131404
UniProt:
M4D9X6
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Position
A01:complement(4885212..4890161)
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AA seq
1114 aa
AA seq
DB search
MGFESSSSAASNMEQPQQKSNTAQQYSVDAGLFADFDHSVYSGKSFNYSKSMISPPNNVP
DEHITAYLSTIQRGGLVQPFGCLIAVQEPSFRILGLSDNCIDFLGLSLASTSQPNHFTVK
GLIGIDARSLFTPSSAASLVKAASFTEISLMNPVLVHSRTTTTASHKPFYAILHRIDAGI
VIDLEPAKSSDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDR
VMVYQFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPV
KVVQSEELKRSLCLVNSTLRAPHSCHTQYMANMGSIASLVLAIVTKTKNSSKLWGLVVGH
HCSPRYVPFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMKTQTLLCDMLLRDTVSAI
VTQSPGIMDLVKCDGAALYYKGRCWLVGVTPSESQVKELVDWLVENHGDESTGLTTDSLV
DAGYPGAVSLGDKVCGVAAAGISLKDYLIWFRSNTASAIKWGGAKHHPKDKDDAGRMHPR
SSFKAFLEVAKSRSLPWEVSEIDAIHSLRVIMRESFTISRPVVLSSGGNNGVVGGRDASE
LTSFVCEMVRVIETATAPIFGVDSNGCVNGWNNKTAEMTGLGAGEAMGKSLVDEIVQEES
RGALESVLSKALQGEEKKNVMLKLRKFGNEDSSSSDVCVLVNSCTSRDYTEKIVGVCFVG
QDMTSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENARCSEWNAAMEKLTGWSKHE
VIGRMLPGEVFGDLCKVKCQDALTKFLISLYQGIAGGGNVPESSVVGFFSKEGKYIEASL
TANKSTNGEGKVIGCFFFLQIINKESSSSSPEVKESAQSLNELAYIRQEIKNPLNGIRFA
HKLLESSEISENQRQFLETSDACEKQIATIIEDTDLKSIEEGKLQMETEEFRLESVLDTI
ISQVMIMLRERKSQLRVEVSQEIKTLPLYGDRVKLQLILADLLRNIVNHAPFPDSWVGIK
ISPGHKLAHDNNPYIHLQFRMIHPGKGLPSEMLSDMFETREGWVTPDGLGLKLSRKLLEQ
MNGRVSYVREDERCFFQVDLQVKTRLGVETGSSI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagagctcttcatcagccgcaagcaacatggaacaaccacaacaaaagtcc
aacacagctcaacaatactccgtcgacgccggcctcttcgccgacttcgaccactctgtc
tactccggcaagtccttcaactactccaagtccatgatctcccctcccaacaacgtcccc
gacgagcacatcaccgcctacctctccaccatccaaagaggcggcctcgtccagcccttc
ggctgcctcatcgccgtccaagagcctagcttcagaatcctcggcctcagcgacaactgc
atcgacttcctcggcctctctctcgcttccacctctcaaccaaaccacttcaccgtcaag
ggtttgatcggaatcgacgccaggtccctcttcactccttcctcagccgcttccttggtc
aaagctgcttcctttactgaaatctccttgatgaaccctgttttagttcactccagaacc
accaccaccgcctcccataagcccttttacgctatccttcacaggatcgacgccgggatt
gtgattgacttggagcccgccaagtcatccgacccggcgttgaccctcgccggggccgtt
cagtctcagaaattggcagtcagagccatctcgaggctccagtcgcttcctggaggagac
attggtgccttgtgtgacaccgttgtggaagatgttcagaggcttaccggctacgaccgt
gtgatggtctaccagtttcacgatgatgatcatggtgaggttgtttcggagattagaagg
tctgatctcgagccttacttgggtttgcactaccctgcgactgatattccacaagctgca
cggttcttgtttaaacagaaccgtgtaagaatgatctgtgattgtaatgccactccggtt
aaagttgtgcagagcgaagagctcaagagatcgctttgtttggtgaactctacattaaga
gctcctcatagctgtcatactcagtatatggcgaatatgggttctattgcatctcttgtt
cttgctattgtgactaaaaccaaaaactcgagtaagctttgggggttagtggtaggccac
cactgttctcctagatacgtgccgtttccgttacgttacgcttgcgagtttctgatgcaa
gcgtttggactccagcttcagatggagcttcagttagcgtcccagctggctgagaagaag
gctatgaagacgcagactttgctgtgcgatatgcttctccgtgatactgtctccgctatc
gtgactcagtctcctgggattatggaccttgtgaagtgcgatggagctgctttgtactac
aaggggaggtgttggctggtcggtgtgactcccagcgagtcgcaggttaaggaactggtg
gattggctggtggagaatcacggtgatgagtctacaggtttgactactgatagtttggtg
gatgctggttaccctggagctgtctctctcggagataaggtctgcggcgtggctgcggcg
gggatctctttaaaagactacttgatttggttcaggtctaataccgctagtgcaatcaaa
tggggaggagctaagcatcaccccaaggataaggatgatgctggaaggatgcatccgagg
tcgtcttttaaagcgtttcttgaagttgcaaagagcaggagcttaccgtgggaagtttct
gagatcgacgcgattcattccctgagggtgataatgagagagtcgtttactatctcaagg
cctgttgtgttgtcgtctggtggtaataacggtgtggtgggggggagagatgcgagtgag
cttacttcttttgtctgtgagatggttagagtgattgaaaccgcgactgcgcctatcttt
ggtgttgattctaatggatgtgtcaatggttggaataataaaaccgctgagatgacgggg
ctgggagctggtgaagctatggggaagtcgcttgtcgatgagattgttcaggaggagtca
cgtggagctcttgagagtgtcttgtctaaagccttacaaggtgaagagaagaagaacgta
atgcttaaactgagaaagtttggtaacgaagattcatcttcttctgatgtgtgtgttctc
gttaactcatgcacgagtagagactatacggagaaaatagtcggtgtctgcttcgttggc
caagacatgactagcgagaaggcaataacagataggttcatcaggctgcaaggagactac
aagaccattgtccaaagcttaaaccctttgattccacctatattcgcatctgatgagaac
gctcgttgctcagagtggaacgcagcaatggagaagctcaccgggtggtcgaagcacgag
gtgattgggaggatgctacctggtgaagtctttggagatttgtgtaaagtgaagtgccaa
gatgcactcacaaagttcttgatctctctgtaccaaggcattgctggtggtggtaatgta
ccagagagttcggtggttgggttctttagtaaagaagggaagtacatagaagcatcatta
acggcgaacaagagtacgaacggtgaagggaaagtcatagggtgtttcttcttcttgcag
ataatcaataaagaatcgagttctagctcaccagaggtgaaagagagcgctcagagtctc
aacgagttggcttacataaggcaagagatcaagaaccctctcaacggtatccggtttgcg
cataagcttcttgaatcctcggagatttcagagaatcaaaggcagtttctggagactagt
gatgcttgtgagaagcagattgcgacaataatcgaagacactgacttgaaaagcattgag
gaaggcaagttgcaaatggagacagaggagtttcgacttgagagcgtcttggacacaatc
attagccaagtgatgattatgttgagagagaggaagtcacaactcagagttgaagtctcc
caggagatcaaaacgctgcctctctatggtgacagagtaaagcttcagctcattcttgct
gatcttctgcgcaacattgtgaatcatgccccgtttccagatagttgggtaggaatcaag
atctcaccaggccacaagcttgcacacgacaataatccctatatccatctacagttcagg
atgatacatcctggaaagggacttccttcagagatgctaagtgatatgttcgagactaga
gaaggatgggtcacgcctgatgggttaggactaaagctttcaaggaaactgctggagcag
atgaatggtcgtgtgagttatgttagagaagacgaacgttgtttctttcaagtggatctt
caagttaagacaaggttaggtgttgagactggttcaagcatatag
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