KEGG   Brassica rapa (field mustard): 103856434
Entry
103856434         CDS       T03449                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103856434
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103856434
Spliceosome [BR:brp03041]
 Complex C
  Other components
   Complex C specific factors
    103856434
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C AAA_22 DEAD HA2_N AAA_30 AAA_19 ResIII AAA_7 AAA_23 nSTAND3 T2SSE AAA_29
Other DBs
NCBI-GeneID: 103856434
NCBI-ProteinID: XP_009131789
LinkDB
Position
A01:5088920..5093758
AA seq 693 aa
MAFWKPGTEKPSFVEDEEGGIVLTSNNLSSSSSSSFGYANIEKQRQRLPVYKYRTEILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVSARVAEEMGV
NLGDEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNTSKKRQAPEGSTQGPKLEPAILSVE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQDDIETAIKLLAEEAH
SNQKNSSGLLTLPLYSGLSRAEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLKEMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASNELGCSDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHITFLNVYKGFLESKKSSQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCD
GDIDAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEAAPHFYQNRQNNM
NT seq 2082 nt   +upstreamnt  +downstreamnt
atggcgttttggaagccaggaacggagaagccaagcttcgtcgaggatgaagaaggaggc
atagtgctcacgtccaacaatctctcatcctcttcttcttctagttttgggtacgcgaat
atagagaagcagaggcagagattgccagtgtacaagtacaggactgagattctgtatctg
gtggagaatcacgctaccaccatcatcgttggcgagacgggcagtggcaaaaccacccag
attcctcagtaccttaaagaagctggatgggcagaaggaggccgtgttattgcttgcaca
cagccaaggcgtttagctgtccagtcggtgtctgcgagggtggcagaagagatgggagtg
aatcttggggatgaagttggatacacaattcgatttgaagatcatacgacttcaggtgtg
actagtgtgaaatttctcactgatggggtactaatccgagagatgatggaggatcctctt
ttgacaaagtatagtgttattatggtagatgaagctcatgagagatctatttctaccgac
attttacttggactcttaaaaaagatacaacgtcgtcgtcctgagctgcgccttatcatc
tcgtcagccacaatcgaagcaaaagcaatgttcaatttcttcaataccagcaagaaacgc
caggcgccagaaggtagtacccaaggaccaaagttggaacctgcaatcttatctgtcgag
ggcagaggcttcagtgtaaaaattcactatgttgaggagcctgtttcagattatattaga
tcggttgtttcaacgattttgttgattaatgagcgggagccacctggggatgttcttgta
tttcttactggtcaagatgatattgaaactgctattaaactgctagcagaagaagctcat
agcaatcaaaagaactcttcaggactactcactctgccgctatattcaggactttcacga
gcagaacaggaattgatctttactccaactcccagaggaaagagaaaagttatactctca
acaaatattgcagaaacatcattgactctggagggagttgtctatgtgattgatagtggt
ttctcaaagcagaaattttataacccaatttcggatatcgaaagtctggtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggcggggcgagttcggcctggaaag
tgttacaggctttacaccgaagattattttctcaaggaaatgcctggagaaggcataccg
gagatgcagagatcgaatcttgtttcaactgtgatacagctaaaagctttgggcatagat
aatatattgggtttcgattggccttcacctccatccccacaagcaatgatccgggcactt
gaagtgctttattcacttcaaatcctcgatgatgatgcgaaactcacttctccaacagga
ttccaagtagctgaacttccactggacccaatgatatcaaaaatgatcttagcttcaaat
gagcttggttgttcagatgagatcattacaatcgctgcagttctgtctatccaatctgtt
tgggtcattgccaggggagtacagaaagaacaagatgaagcaaaactgagatttgcagct
gcggagggtgaccatatcacattcctcaatgtatacaaagggtttctcgaatccaaaaag
tcttcacagtggtgttacaagaattttctgaactatcaatccatgaaaaaggttgttgaa
atcagagatcaactcaaacggattgctcggagattaggcatcaccctgaaatcatgtgac
ggagacatagatgctgtgagaaaagcagtgactgcagggtttttcgccaatgcatgccgc
ttagaaccacacagcaatggagtattcaagaccattagaggctctgaagaagtttatatc
cacccatcgtccgtattgttcagggtgaatccgaaatgggtggtttaccagtccattgtc
tcaacagagcgtcaatacatgcggaatgtcgtcaccatcaatccttcttggctgacagaa
gctgctccacacttttaccagaaccgccaaaacaatatgtaa

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