Brassica rapa (field mustard): 103856434
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Entry
103856434 CDS
T03449
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103856434
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103856434
Spliceosome [BR:
brp03041
]
Complex C
Other components
Complex C specific factors
103856434
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
ResIII
AAA_7
AAA_23
nSTAND3
T2SSE
AAA_29
Motif
Other DBs
NCBI-GeneID:
103856434
NCBI-ProteinID:
XP_009131789
LinkDB
All DBs
Position
A01:5088920..5093758
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AA seq
693 aa
AA seq
DB search
MAFWKPGTEKPSFVEDEEGGIVLTSNNLSSSSSSSFGYANIEKQRQRLPVYKYRTEILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVSARVAEEMGV
NLGDEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNTSKKRQAPEGSTQGPKLEPAILSVE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQDDIETAIKLLAEEAH
SNQKNSSGLLTLPLYSGLSRAEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLKEMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASNELGCSDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHITFLNVYKGFLESKKSSQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCD
GDIDAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEAAPHFYQNRQNNM
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttggaagccaggaacggagaagccaagcttcgtcgaggatgaagaaggaggc
atagtgctcacgtccaacaatctctcatcctcttcttcttctagttttgggtacgcgaat
atagagaagcagaggcagagattgccagtgtacaagtacaggactgagattctgtatctg
gtggagaatcacgctaccaccatcatcgttggcgagacgggcagtggcaaaaccacccag
attcctcagtaccttaaagaagctggatgggcagaaggaggccgtgttattgcttgcaca
cagccaaggcgtttagctgtccagtcggtgtctgcgagggtggcagaagagatgggagtg
aatcttggggatgaagttggatacacaattcgatttgaagatcatacgacttcaggtgtg
actagtgtgaaatttctcactgatggggtactaatccgagagatgatggaggatcctctt
ttgacaaagtatagtgttattatggtagatgaagctcatgagagatctatttctaccgac
attttacttggactcttaaaaaagatacaacgtcgtcgtcctgagctgcgccttatcatc
tcgtcagccacaatcgaagcaaaagcaatgttcaatttcttcaataccagcaagaaacgc
caggcgccagaaggtagtacccaaggaccaaagttggaacctgcaatcttatctgtcgag
ggcagaggcttcagtgtaaaaattcactatgttgaggagcctgtttcagattatattaga
tcggttgtttcaacgattttgttgattaatgagcgggagccacctggggatgttcttgta
tttcttactggtcaagatgatattgaaactgctattaaactgctagcagaagaagctcat
agcaatcaaaagaactcttcaggactactcactctgccgctatattcaggactttcacga
gcagaacaggaattgatctttactccaactcccagaggaaagagaaaagttatactctca
acaaatattgcagaaacatcattgactctggagggagttgtctatgtgattgatagtggt
ttctcaaagcagaaattttataacccaatttcggatatcgaaagtctggtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggcggggcgagttcggcctggaaag
tgttacaggctttacaccgaagattattttctcaaggaaatgcctggagaaggcataccg
gagatgcagagatcgaatcttgtttcaactgtgatacagctaaaagctttgggcatagat
aatatattgggtttcgattggccttcacctccatccccacaagcaatgatccgggcactt
gaagtgctttattcacttcaaatcctcgatgatgatgcgaaactcacttctccaacagga
ttccaagtagctgaacttccactggacccaatgatatcaaaaatgatcttagcttcaaat
gagcttggttgttcagatgagatcattacaatcgctgcagttctgtctatccaatctgtt
tgggtcattgccaggggagtacagaaagaacaagatgaagcaaaactgagatttgcagct
gcggagggtgaccatatcacattcctcaatgtatacaaagggtttctcgaatccaaaaag
tcttcacagtggtgttacaagaattttctgaactatcaatccatgaaaaaggttgttgaa
atcagagatcaactcaaacggattgctcggagattaggcatcaccctgaaatcatgtgac
ggagacatagatgctgtgagaaaagcagtgactgcagggtttttcgccaatgcatgccgc
ttagaaccacacagcaatggagtattcaagaccattagaggctctgaagaagtttatatc
cacccatcgtccgtattgttcagggtgaatccgaaatgggtggtttaccagtccattgtc
tcaacagagcgtcaatacatgcggaatgtcgtcaccatcaatccttcttggctgacagaa
gctgctccacacttttaccagaaccgccaaaacaatatgtaa
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