Brassica rapa (field mustard): 103856920
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Entry
103856920 CDS
T03449
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103856920
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
90S particles
Other 90S particles
103856920
Pre-60S particles
Other pre-60S particles
103856920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_EIPR1
WD40_Gbeta
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
Beta-prop_Aladin
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_DCAF12
NBCH_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NUP159_NUP214
Beta-prop_Nup120_160
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
103856920
NCBI-ProteinID:
XP_009132293
UniProt:
M4DA50
LinkDB
All DBs
Position
A01:5343017..5346355
Genome browser
AA seq
502 aa
AA seq
DB search
MITALSWIPKGSLKAVPDAAEPPSKEEIKELIESGAFVGSVDGSNEDGEDIEEEEEEEDG
DQISEVDRAKAVAEAFGKSSNSKSSSMEVDEVAAAMKELDMDNYDEEDDGIELFSSGLGD
LYYPSNELDPYLKDAADDDDDDEEDIDDTTIKPTDSVIICARNEDEVSHLEVYVYEESSN
GSPNMYVHHHIVIPEFPLCTAWIDCPLKGGDKGNFVAIGSKDSPTIEIWDLDVRDEVLPC
VQLGGIEEMKIIKKKKSKKEKIRKPIYKEGSHTDSVLGLAWNKEFRNILASASADRKVKV
WDVATGQCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVLKDGRQPSHSGFKWSVMS
DVESLAWNPHNEHSFVVSLEDGTVKGFDIRVAQSGSDSDLKPSFTIQAHDQDKGVSSISY
NTSAPNLLATGSMDKTVKLWDLSNNEPSCITSHKPKAGAVFSISFSADNPFLLAIGGSKG
ELHVWDTLLDANVARKYGKNQS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgataactgcactttcgtggatacctaaagggtctttaaaggctgttcctgatgctgct
gagcctccttcaaaggaagagatcaaggagctcattgagagtggagctttcgtgggaagc
gtggatggtagtaacgaggatggagaagatatagaggaagaagaagaagaagaagatggg
gatcagattagtgaagttgatcgtgccaaggctgtagcagaagcttttggtaaatcatcc
aatagcaaatcttcctctatggaggttgatgaggtagctgctgcgatgaaagaactcgac
atggataactatgatgaagaggatgatggaattgaactcttcagctctgggcttggggat
ctttattatccaagcaatgagttggatccctatctgaaggatgctgctgatgatgatgat
gacgatgaagaggatattgatgatacgactatcaagccaacagattcagtgattatctgc
gctaggaatgaagatgaagtcagccatctagaggtttatgtgtacgaagaatcatccaac
ggctcaccaaacatgtatgttcatcatcacatagttataccagagtttccgttgtgtact
gcatggattgattgtcctcttaaaggaggggacaaagggaattttgtagctattggatca
aaggattcgccgacgatagagatatgggatcttgacgttagggacgaggtgctcccttgt
gtgcaactaggaggaatagaggagatgaagattatcaagaaaaagaagagtaagaaagag
aagatcaggaagccgatatacaaagaaggcagccacactgattcagtacttggtcttgct
tggaacaaggagttccggaatatactggctagtgctagtgccgacagaaaagttaaggtg
tgggatgtggctactggacagtgtaagatcactatggagcatcacacaaaggaggttcaa
gcggttgcttggaatcattatgctccagaagtgcttctcagtgggtcatttgatcagact
gttgtattgaaagacggacgacaaccttcgcactctggtttcaaatggtctgtcatgtct
gatgtcgaaagcttagcctggaatccccacaatgaacactcctttgtggtaagtcttgag
gatggaaccgtgaaaggttttgatatacgcgtcgcacagtcaggttcagattctgattta
aaaccaagctttactatccaagcacatgaccaagacaaaggagtctcctccatctcatac
aacacttctgcacccaatcttttggctacggggtctatggataaaacggtaaaactttgg
gatctttcaaacaacgagccttcatgcattacttcacacaaaccaaaagctggagctgta
ttctccatttccttctcagcagacaatcctttcttgcttgctattggtggctcaaaggga
gagctacatgtttgggatacgctcttggacgctaacgtcgctcgcaaatatgggaaaaac
caatcttga
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