Brassica rapa (field mustard): 103857598
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Entry
103857598 CDS
T03449
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103857598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103857598
03012 Translation factors [BR:
brp03012
]
103857598
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103857598
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103857598
Translation factors [BR:
brp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103857598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
ABC_tran
T2SSE
NACHT
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103857598
NCBI-ProteinID:
XP_009133057
LinkDB
All DBs
Position
A03:8778595..8783505
Genome browser
AA seq
1028 aa
AA seq
DB search
MHLASLSPLSTLRFLLPLSPKLFPLPSLFRISAMGPNSQGGRRGGGFSSNRGGGRRGGRG
GGGGRGGGGGRGEQRWWDPVWRAERLRQQQAEMEVFDENEWWNKIEQMKTGGEQEMVIKR
NFSRGDQQTLGDMAYQMGLYFHAYNKGKALVVSKVPLPDYRADLDDRHGSTQKEIQMSSE
TERKLGSLLKTTQQVGSTSGSNDQQDRTSAIGVKKSDSASKFSDSHEKEKFSVALKDRQD
KLKATESVKALHAFREKLPAFKMKQDFLTSVSENQVLVVSGETGCGKTTQLPQFILEEEI
SSLRGADCNIICTQPRRISAISVASRISAERGEPIGESVGYQIRLESKRSDQTRLLFCTT
GVLLRRLIEDPNLSGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATINAD
MFSTYFGNAPTMHIPGFTFPVTELFLEDVLEKSRYTIKPSDSGNYQGGSRGRRRDSESKK
DDLTTLFEDIDINVHYKSYSSATRVSLESWSGAQIDLELVEATIEHICRGEGDGAILVFL
TGWDEISKLLENIKGNRLLGDSSKFLVLPLHGSMPTVNQREIFERPPPNKRKIVLATNIA
ESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQAGVCYRL
YPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIELL
KTIGALDDTEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIASALAYRSPFVLP
LNRKEEADEAKRYFAGDSCSDHIALVKAFEGYRDAKRGGHERDFCWENFLSPLTLKMMED
MRNQFLDLLSDIGFVDKSRGPNVYNQYSQDMEMVTAVLCAGLYPNVVQCKRRGKRTAFYT
KELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGGSLMPSQ
TGEGIEMLGGYLHFSASKNVLELIQRLRGEVDKLLNRKIEDPSLDITVEGKGVVSAVVEL
LRSRNIRY
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgcacctggcatctctctcgcctctttccacacttcgcttcctccttccattatctccc
aaactctttcctcttccttctctcttccgaatctctgccatgggtcctaactctcagggt
ggtcgccgaggcggaggtttctcctcaaatcgcggtggaggtcgccgtggtggacgcgga
ggcggtggtggacgcggcggaggaggtggccgtggagaacagagatggtgggatccggtg
tggagagccgagcgtttacgccagcaacaggctgagatggaagtttttgatgagaatgaa
tggtggaacaagattgagcagatgaaaactggaggtgaacaagagatggtgataaagcgt
aattttagccgtggtgatcagcaaacactcggtgatatggcttatcagatgggtctttac
ttccatgcgtacaataaagggaaggctcttgtagttagcaaagttcctttgccagattat
agagcagatcttgatgaccgacatggatccactcagaaagagattcaaatgtcttcagag
acagagagaaaacttgggagtcttttgaaaacaacacaacaagtaggctctacttcagga
tctaatgaccaacaggatcgtacatcagctattggcgtgaagaaatctgattctgcttcc
aaattttcggattctcatgagaaagaaaaattcagtgttgcactcaaggacaggcaggat
aaattaaaggcaactgaaagtgtaaaagcacttcatgctttcagagagaagctacctgct
ttcaaaatgaaacaagacttccttacctctgtttctgaaaatcaggtactggtagtttca
ggagagacaggatgtggtaaaacaacacaacttcctcagtttatattggaggaagagata
tcatccctgagaggtgctgactgcaacataatatgcacacagcctcggcgtatatctgcc
atatccgtggcatctcgtatctctgctgaaagaggtgaacccattggtgaatctgtgggt
taccagatccgtcttgaatcaaagcgttctgaccaaacacggttgctgttttgcacaact
ggtgttttactgagacggctaattgaggatcctaatctaagcggcgtaagccatttgcta
gtagatgaaattcacgagagaggcatgaacgaggacttcttactaatcatactaagggat
cttcttcctcgacgtcctgatttgcgtcttgttctgatgagtgctactattaacgctgac
atgttctcaacgtattttgggaacgctccaactatgcatatccctgggttcacattccct
gtgacagagttattcctagaagatgtattagagaaaagtcgctatactattaagccgtca
gactcagggaattatcaaggtggctctagaggtagaagaagagactcagaatccaagaaa
gacgatctgactacactgtttgaggatattgacatcaatgttcactacaaaagttatagc
tcagccacaagagtttctctcgaatcatggtctggtgcacagattgatttggagctggtt
gaggcaacaatcgaacatatttgccgtggtgaaggtgatggagccattcttgttttcctc
actggctgggatgagatttccaagctgcttgaaaatatcaaagggaacaggttacttgga
gactcgagcaagttcttagttcttcctctacatggttcaatgccgaccgttaaccaacgt
gaaatctttgaacgtccacctcctaacaagcggaagatagttttggctacaaacattgct
gagagtagtatcacaatcgatgatgttgtttacgttgtggactgcggtaaagcaaaggaa
actagctacgatgctttgaacaaggtggcttgtctcttaccatcatggatctcaaaggct
tcagctcatcagagacgaggtcgtgcaggacgtgtccaagctggagtgtgttataggctg
tacccaaaagttatttacgatgctttcccacagtatcagttaccagagatcatacggact
ccactgcaagagctgtgcctgcacatcaaaagcttgcaggttggatccattggatctttc
ttggcgaaggcgcttcagccgcctgatgctctcgctgttgagaatgctattgagcttctc
aaaacaattggggctttagatgatacagaagagcttacaccccttggtcgtcatctttgc
actctacctgttgaccctaacataggaaagatgcttctcattggagctatcttccagtgt
gtcaaccctgcgctgacaatagcctctgctctggcgtaccgtagtccctttgtcttaccg
ttaaataggaaagaggaagctgatgaagccaaaagatactttgctggtgactcctgcagt
gaccacattgctttagttaaggcctttgaagggtatagagacgcaaagcgtggtggacac
gaaagagatttttgttgggagaactttctttcccctctaaccctaaagatgatggaggac
atgaggaaccagtttcttgatcttctttcggatataggcttcgttgacaaatcaagagga
ccaaacgtatacaatcagtacagccaagacatggagatggtaaccgcggttctgtgtgcg
gggctgtacccaaacgttgtgcaatgcaaaagaagagggaagcgcactgccttctacact
aaagagttgggtaaagtagatattcaccctggatcagtcaatgctagggtgaatctcttc
tcgttgccatacttggtttacagcgagaaggtgaagacgacaagtgtttatatccgggac
tcgacgaacatatcggattacgcactgcttatgtttggtggtagtcttatgccaagccag
accggggaaggtatagagatgctgggagggtatctccatttctcagcctccaagaacgtc
ttggaactgatacagaggttgaggggagaggtggataagctgctgaataggaagatagag
gatccgagtttggacataacggtggaggggaaaggtgtggtttcggctgtagtggagctg
ttgcgtagccgaaacatcaggtattag
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